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Genome Details

Selected Rep_genome_ID: HRGMv2_0300
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→
Species
Prevotella buccae
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR064862 2,875,096 93.01% 0% China Asia CGMR
HRGMv2_0300 3,078,049 99.31% 0% South Korea Asia HRGM
MGYG000000289 3,001,000 98.47% 0% Sweden Europe UHGG
Rep_196 3,164,916 92.2198% 0.337838% NA NA WIS
SW046_66 3,057,907 98.98% 0% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0300_CGC15 CGCFAM_00001 Yes 5 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0300_CGC25 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0300_CGC18 CGCFAM_00005 Yes 6 3
HRGMv2_0300_CGC36 CGCFAM_00017 Yes 6 2 fructan
HRGMv2_0300_CGC22 CGCFAM_00034 Yes 13 5
HRGMv2_0300_CGC34 CGCFAM_00043 Yes 5 2 alpha-glucan
HRGMv2_0300_CGC16 CGCFAM_00044 Yes 16 5 beta-mannan/xylan/beta-glucan
HRGMv2_0300_CGC19 CGCFAM_00048 Yes 16 4
HRGMv2_0300_CGC31 CGCFAM_00108 Yes 11 3 pectin
HRGMv2_0300_CGC9 CGCFAM_00180 Yes 4 1
HRGMv2_0300_CGC10 CGCFAM_00186 Yes 6 2
HRGMv2_0300_CGC2 CGCFAM_00310 Yes 10 1
HRGMv2_0300_CGC41 CGCFAM_00326 Yes 3 1
HRGMv2_0300_CGC44 CGCFAM_00332 Yes 10 6
HRGMv2_0300_CGC45 CGCFAM_00604 Yes 14 2
HRGMv2_0300_CGC40 CGCFAM_00925 Yes 9 5 beta-glucan
HRGMv2_0300_CGC8 CGCFAM_01035 Yes 6 3
HRGMv2_0300_CGC35 CGCFAM_01475 Yes 12 7 pectin
HRGMv2_0300_CGC48 CGCFAM_02538 Yes 4 1
HRGMv2_0300_CGC39 CGCFAM_05958 Yes 15 1
Top CAZyme Families