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Cluster: HRGMv2_0300_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0300_4 HRGMv2_0300_4_24 30086 31438 - GH13
NULL(UNKNOWN) HRGMv2_0300_4 HRGMv2_0300_4_25 31709 33130 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0300_4 HRGMv2_0300_4_26 33203 34396 - SusE | SusF_SusE
TC HRGMv2_0300_4 HRGMv2_0300_4_27 34475 36085 - 8.A.46.1.1
TC HRGMv2_0300_4 HRGMv2_0300_4_28 36106 39255 - 1.B.14.6.1
TF HRGMv2_0300_4 HRGMv2_0300_4_29 39560 40585 + LacI
TC HRGMv2_0300_4 HRGMv2_0300_4_30 40637 41944 + 2.A.2.6.2
CAZyme HRGMv2_0300_4 HRGMv2_0300_4_31 42069 44759 + GH77
CAZyme HRGMv2_0300_4 HRGMv2_0300_4_32 44769 46901 + GH97
CAZyme HRGMv2_0300_4 HRGMv2_0300_4_33 47163 49052 + GH13_14
CAZyme HRGMv2_0300_4 HRGMv2_0300_4_34 49104 50978 + GH13_46
TC HRGMv2_0300_4 HRGMv2_0300_4_35 51089 51664 - 2.A.51.1.6
TC HRGMv2_0300_4 HRGMv2_0300_4_36 51728 52357 - 2.A.51.1.6
Gene ID: HRGMv2_0300_4_24
Type: CAZyme
Location: 30086 - 31438 (-)
Gene ID: HRGMv2_0300_4_25
Type:
Location: 31709 - 33130 (-)
Gene ID: HRGMv2_0300_4_26
Type: pfam
Location: 33203 - 34396 (-)
Gene ID: HRGMv2_0300_4_27
Type: TC
Location: 34475 - 36085 (-)
Gene ID: HRGMv2_0300_4_28
Type: TC
Location: 36106 - 39255 (-)
Gene ID: HRGMv2_0300_4_29
Type: TF
Location: 39560 - 40585 (+)
Gene ID: HRGMv2_0300_4_30
Type: TC
Location: 40637 - 41944 (+)
Gene ID: HRGMv2_0300_4_31
Type: CAZyme
Location: 42069 - 44759 (+)
Gene ID: HRGMv2_0300_4_32
Type: CAZyme
Location: 44769 - 46901 (+)
Gene ID: HRGMv2_0300_4_33
Type: CAZyme
Location: 47163 - 49052 (+)
Gene ID: HRGMv2_0300_4_34
Type: CAZyme
Location: 49104 - 50978 (+)
Gene ID: HRGMv2_0300_4_35
Type: TC
Location: 51089 - 51664 (-)
Gene ID: HRGMv2_0300_4_36
Type: TC
Location: 51728 - 52357 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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