Cluster: HRGMv2_0300_CGC16
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0300
- CGC Family ID: CGCFAM_00044
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0300_2 | HRGMv2_0300_2_252 | 347991 | 351230 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0300_2 | HRGMv2_0300_2_253 | 352109 | 352255 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0300_2 | HRGMv2_0300_2_254 | 352277 | 354235 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0300_2 | HRGMv2_0300_2_255 | 354427 | 357534 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0300_2 | HRGMv2_0300_2_256 | 357843 | 359510 | - | GH35 |
| CAZyme | HRGMv2_0300_2 | HRGMv2_0300_2_257 | 359573 | 361600 | - | GH67 |
| TF | HRGMv2_0300_2 | HRGMv2_0300_2_258 | 361674 | 365813 | - | HTH_AraC |
| pfam | HRGMv2_0300_2 | HRGMv2_0300_2_259 | 365986 | 367149 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | HRGMv2_0300_2 | HRGMv2_0300_2_260 | 367162 | 368610 | + | 2.A.2.3.4 |
| TC | HRGMv2_0300_2 | HRGMv2_0300_2_261 | 368638 | 370047 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_0300_2 | HRGMv2_0300_2_262 | 370069 | 371184 | + | GH10 |
| CAZyme | HRGMv2_0300_2 | HRGMv2_0300_2_263 | 371391 | 372353 | + | GH43_1 |
| NULL(UNKNOWN) | HRGMv2_0300_2 | HRGMv2_0300_2_264 | 372496 | 373938 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0300_2 | HRGMv2_0300_2_265 | 374013 | 376364 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0300_2 | HRGMv2_0300_2_266 | 376301 | 376468 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0300_2 | HRGMv2_0300_2_267 | 376617 | 377345 | - | 3.A.1.128.7 |
Gene ID: HRGMv2_0300_2_252
Type: TC
Location: 347991 - 351230 (-)
Type: TC
Location: 347991 - 351230 (-)
Gene ID: HRGMv2_0300_2_253
Type:
Location: 352109 - 352255 (+)
Type:
Location: 352109 - 352255 (+)
Gene ID: HRGMv2_0300_2_254
Type: pfam
Location: 352277 - 354235 (-)
Type: pfam
Location: 352277 - 354235 (-)
Gene ID: HRGMv2_0300_2_255
Type: TC
Location: 354427 - 357534 (-)
Type: TC
Location: 354427 - 357534 (-)
Gene ID: HRGMv2_0300_2_256
Type: CAZyme
Location: 357843 - 359510 (-)
Type: CAZyme
Location: 357843 - 359510 (-)
Gene ID: HRGMv2_0300_2_257
Type: CAZyme
Location: 359573 - 361600 (-)
Type: CAZyme
Location: 359573 - 361600 (-)
Gene ID: HRGMv2_0300_2_258
Type: TF
Location: 361674 - 365813 (-)
Type: TF
Location: 361674 - 365813 (-)
Gene ID: HRGMv2_0300_2_259
Type: pfam
Location: 365986 - 367149 (+)
Type: pfam
Location: 365986 - 367149 (+)
Gene ID: HRGMv2_0300_2_260
Type: TC
Location: 367162 - 368610 (+)
Type: TC
Location: 367162 - 368610 (+)
Gene ID: HRGMv2_0300_2_261
Type: TC
Location: 368638 - 370047 (+)
Type: TC
Location: 368638 - 370047 (+)
Gene ID: HRGMv2_0300_2_262
Type: CAZyme
Location: 370069 - 371184 (+)
Type: CAZyme
Location: 370069 - 371184 (+)
Gene ID: HRGMv2_0300_2_263
Type: CAZyme
Location: 371391 - 372353 (+)
Type: CAZyme
Location: 371391 - 372353 (+)
Gene ID: HRGMv2_0300_2_264
Type:
Location: 372496 - 373938 (+)
Type:
Location: 372496 - 373938 (+)
Gene ID: HRGMv2_0300_2_265
Type: CAZyme
Location: 374013 - 376364 (+)
Type: CAZyme
Location: 374013 - 376364 (+)
Gene ID: HRGMv2_0300_2_266
Type:
Location: 376301 - 376468 (-)
Type:
Location: 376301 - 376468 (-)
Gene ID: HRGMv2_0300_2_267
Type: TC
Location: 376617 - 377345 (-)
Type: TC
Location: 376617 - 377345 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella buccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0300_2_263 | vegetarian > omnivore | 1.03083 | 0.02320 |