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Genome Details

Selected Rep_genome_ID: CGMR025896
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes sp001941065
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR025896 3,475,073 98.64% 0.96% China Asia CGMR
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
CGMR025896_CGC23 CGCFAM_00001 Yes 8 5 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
CGMR025896_CGC59 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
CGMR025896_CGC3 CGCFAM_00006 Yes 9 6
CGMR025896_CGC46 CGCFAM_00017 Yes 6 3 fructan
CGMR025896_CGC24 CGCFAM_00023 Yes 3 1
CGMR025896_CGC14 CGCFAM_00030 Yes 3 1
CGMR025896_CGC52 CGCFAM_00079 Yes 5 1 pectin
CGMR025896_CGC54 CGCFAM_00129 Yes 5 2 beta-mannan
CGMR025896_CGC35 CGCFAM_00152 Yes 11 4
CGMR025896_CGC19 CGCFAM_00219 Yes 10 7 host glycan
CGMR025896_CGC51 CGCFAM_00417 Yes 4 1
CGMR025896_CGC17 CGCFAM_00440 Yes 13 6
CGMR025896_CGC57 CGCFAM_00475 Yes 10 3
CGMR025896_CGC29 CGCFAM_00543 Yes 4 2
CGMR025896_CGC53 CGCFAM_00632 Yes 10 1
CGMR025896_CGC42 CGCFAM_00727 Yes 4 2
CGMR025896_CGC39 CGCFAM_00828 Yes 9 4
CGMR025896_CGC37 CGCFAM_01287 Yes 6 1
CGMR025896_CGC13 CGCFAM_01434 Yes 6 2
CGMR025896_CGC20 CGCFAM_01681 Yes 7 1
CGMR025896_CGC5 CGCFAM_01682 Yes 8 1
CGMR025896_CGC22 CGCFAM_01741 Yes 5 1
CGMR025896_CGC32 CGCFAM_02181 Yes 6 1
CGMR025896_CGC4 CGCFAM_05401 Yes 3 1
CGMR025896_CGC10 CGCFAM_08251 Yes 13 2
Top CAZyme Families