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Genome Details

Selected Rep_genome_ID: B111.bin_19
Total Genomes Found: 15
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes onderdonkii
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
B111.bin_19 3,320,654 99.28% 0.48% China(Inner Mongolia) Asia IMGG
CGMR005540 3,393,006 99.28% 0.48% China Asia CGMR
GCF_021620835.1_ASM2162083v1_genomic 3,416,485 98.06% 0.99% NA Africa H3AfricaPhase1
GCF_021621225.1_ASM2162122v1_genomic 3,369,510 98.8% 0.48% NA Africa H3AfricaPhase1
GCF_021621505.1_ASM2162150v1_genomic 3,179,645 96.1% 0.48% NA Africa H3AfricaPhase1
Rep_620 3,263,232 98.6378% 0.480769% NA NA WIS
SPMP06_bin.9 3,337,314 98.08% 0.48% Singapore Asia SPMP
SPMP100_bin.38 3,217,625 95.91% 0.48% Singapore Asia SPMP
SPMP16_bin.35 3,015,973 90.88% 0.72% Singapore Asia SPMP
SPMP20_bin.23 3,027,669 94.95% 0.16% Singapore Asia SPMP
SPMP27_bin.38 3,127,644 96.88% 0.96% Singapore Asia SPMP
SPMP77_bin.12 3,398,715 97.44% 0.48% Singapore Asia SPMP
SPMP89_bin.69 3,002,662 94.68% 0.48% Singapore Asia SPMP
SPMP95_bin.23 3,272,360 97.36% 0.72% Singapore Asia SPMP
SW184_maxbin.006 2,996,891 99.28% 0.48% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
B111.bin_19_CGC14 CGCFAM_00001 Yes 10 4 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
B111.bin_19_CGC18 CGCFAM_00006 Yes 10 5
B111.bin_19_CGC11 CGCFAM_00016 Yes 16 8 host glycan
B111.bin_19_CGC25 CGCFAM_00016 Yes 6 2 host glycan
B111.bin_19_CGC6 CGCFAM_00016 Yes 5 1 host glycan
B111.bin_19_CGC20 CGCFAM_00075 Yes 3 2
B111.bin_19_CGC31 CGCFAM_00128 Yes 15 6
B111.bin_19_CGC33 CGCFAM_00188 Yes 3 2
B111.bin_19_CGC7 CGCFAM_00368 Yes 3 1
B111.bin_19_CGC21 CGCFAM_00475 Yes 15 2
B111.bin_19_CGC27 CGCFAM_00524 Yes 4 1
B111.bin_19_CGC5 CGCFAM_00579 Yes 4 1
B111.bin_19_CGC37 CGCFAM_00617 Yes 6 1
B111.bin_19_CGC24 CGCFAM_00632 Yes 9 1
B111.bin_19_CGC15 CGCFAM_00697 Yes 6 2
B111.bin_19_CGC8 CGCFAM_00840 Yes 3 1
B111.bin_19_CGC1 CGCFAM_01681 Yes 6 1
B111.bin_19_CGC17 CGCFAM_01682 Yes 8 1
B111.bin_19_CGC30 CGCFAM_02057 Yes 4 1
B111.bin_19_CGC29 CGCFAM_02291 Yes 11 5
B111.bin_19_CGC28 CGCFAM_02447 Yes 4 1
B111.bin_19_CGC26 CGCFAM_02581 Yes 8 2
B111.bin_19_CGC4 CGCFAM_02583 Yes 3 1
B111.bin_19_CGC16 CGCFAM_03398 Yes 24 14
B111.bin_19_CGC34 CGCFAM_03400 Yes 15 5
Top CAZyme Families