Cluster: B111.bin_19_CGC16
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 14
- Substrate:
- Genome ID: B111.bin_19
- CGC Family ID: CGCFAM_03398
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B111_contig_92 | B111_contig_92_714 | 830528 | 832249 | - | GH123 |
| CAZyme | B111_contig_92 | B111_contig_92_715 | 832270 | 834207 | - | GH127 |
| CAZyme | B111_contig_92 | B111_contig_92_716 | 834220 | 836454 | - | GH3 |
| TF | B111_contig_92 | B111_contig_92_717 | 836773 | 840906 | + | HTH_AraC |
| CAZyme | B111_contig_92 | B111_contig_92_718 | 841134 | 842891 | + | GH20 |
| CAZyme | B111_contig_92 | B111_contig_92_719 | 842902 | 845232 | + | GH3 |
| CAZyme | B111_contig_92 | B111_contig_92_720 | 845258 | 847555 | + | GH3 |
| CAZyme | B111_contig_92 | B111_contig_92_721 | 847578 | 849164 | + | GH20 |
| NULL(UNKNOWN) | B111_contig_92 | B111_contig_92_722 | 849197 | 850306 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B111_contig_92 | B111_contig_92_723 | 850356 | 852371 | + | GH97 |
| CAZyme | B111_contig_92 | B111_contig_92_724 | 852376 | 854370 | + | GH65 |
| pfam | B111_contig_92 | B111_contig_92_725 | 854379 | 855215 | + | Exo_endo_phos |
| pfam | B111_contig_92 | B111_contig_92_726 | 855275 | 856207 | - | Metallophos |
| TC | B111_contig_92 | B111_contig_92_727 | 856425 | 859541 | + | 1.B.14.6.1 |
| TC | B111_contig_92 | B111_contig_92_728 | 859564 | 861414 | + | 8.A.46.1.3 |
| CAZyme | B111_contig_92 | B111_contig_92_729 | 861444 | 862316 | + | CBM32 |
| CAZyme | B111_contig_92 | B111_contig_92_730 | 862346 | 864079 | + | GH5_38 |
| CAZyme | B111_contig_92 | B111_contig_92_731 | 864082 | 865572 | + | GH28 |
| CAZyme | B111_contig_92 | B111_contig_92_732 | 865582 | 867855 | + | GH28 |
| pfam | B111_contig_92 | B111_contig_92_733 | 867921 | 869357 | + | Mfa_like_1 |
| NULL(UNKNOWN) | B111_contig_92 | B111_contig_92_734 | 869508 | 871013 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B111_contig_92 | B111_contig_92_735 | 871071 | 872942 | + | GH20 |
| peptidase | B111_contig_92 | B111_contig_92_736 | 874277 | 876055 | - | S49.A08 |
| TC | B111_contig_92 | B111_contig_92_737 | 876233 | 877285 | + | 3.A.1.132.3 |
Gene ID: B111_contig_92_714
Type: CAZyme
Location: 830528 - 832249 (-)
Type: CAZyme
Location: 830528 - 832249 (-)
Gene ID: B111_contig_92_715
Type: CAZyme
Location: 832270 - 834207 (-)
Type: CAZyme
Location: 832270 - 834207 (-)
Gene ID: B111_contig_92_716
Type: CAZyme
Location: 834220 - 836454 (-)
Type: CAZyme
Location: 834220 - 836454 (-)
Gene ID: B111_contig_92_717
Type: TF
Location: 836773 - 840906 (+)
Type: TF
Location: 836773 - 840906 (+)
Gene ID: B111_contig_92_718
Type: CAZyme
Location: 841134 - 842891 (+)
Type: CAZyme
Location: 841134 - 842891 (+)
Gene ID: B111_contig_92_719
Type: CAZyme
Location: 842902 - 845232 (+)
Type: CAZyme
Location: 842902 - 845232 (+)
Gene ID: B111_contig_92_720
Type: CAZyme
Location: 845258 - 847555 (+)
Type: CAZyme
Location: 845258 - 847555 (+)
Gene ID: B111_contig_92_721
Type: CAZyme
Location: 847578 - 849164 (+)
Type: CAZyme
Location: 847578 - 849164 (+)
Gene ID: B111_contig_92_722
Type:
Location: 849197 - 850306 (+)
Type:
Location: 849197 - 850306 (+)
Gene ID: B111_contig_92_723
Type: CAZyme
Location: 850356 - 852371 (+)
Type: CAZyme
Location: 850356 - 852371 (+)
Gene ID: B111_contig_92_724
Type: CAZyme
Location: 852376 - 854370 (+)
Type: CAZyme
Location: 852376 - 854370 (+)
Gene ID: B111_contig_92_725
Type: pfam
Location: 854379 - 855215 (+)
Type: pfam
Location: 854379 - 855215 (+)
Gene ID: B111_contig_92_726
Type: pfam
Location: 855275 - 856207 (-)
Type: pfam
Location: 855275 - 856207 (-)
Gene ID: B111_contig_92_727
Type: TC
Location: 856425 - 859541 (+)
Type: TC
Location: 856425 - 859541 (+)
Gene ID: B111_contig_92_728
Type: TC
Location: 859564 - 861414 (+)
Type: TC
Location: 859564 - 861414 (+)
Gene ID: B111_contig_92_729
Type: CAZyme
Location: 861444 - 862316 (+)
Type: CAZyme
Location: 861444 - 862316 (+)
Gene ID: B111_contig_92_730
Type: CAZyme
Location: 862346 - 864079 (+)
Type: CAZyme
Location: 862346 - 864079 (+)
Gene ID: B111_contig_92_731
Type: CAZyme
Location: 864082 - 865572 (+)
Type: CAZyme
Location: 864082 - 865572 (+)
Gene ID: B111_contig_92_732
Type: CAZyme
Location: 865582 - 867855 (+)
Type: CAZyme
Location: 865582 - 867855 (+)
Gene ID: B111_contig_92_733
Type: pfam
Location: 867921 - 869357 (+)
Type: pfam
Location: 867921 - 869357 (+)
Gene ID: B111_contig_92_734
Type:
Location: 869508 - 871013 (+)
Type:
Location: 869508 - 871013 (+)
Gene ID: B111_contig_92_735
Type: CAZyme
Location: 871071 - 872942 (+)
Type: CAZyme
Location: 871071 - 872942 (+)
Gene ID: B111_contig_92_736
Type: peptidase
Location: 874277 - 876055 (-)
Type: peptidase
Location: 874277 - 876055 (-)
Gene ID: B111_contig_92_737
Type: TC
Location: 876233 - 877285 (+)
Type: TC
Location: 876233 - 877285 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes onderdonkii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.