Cluster: B111.bin_19_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: B111.bin_19
- CGC Family ID: CGCFAM_02291
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B111_contig_1436 | B111_contig_1436_38 | 48023 | 51403 | + | 1.B.14.6.13 |
| TC | B111_contig_1436 | B111_contig_1436_39 | 51412 | 53019 | + | 8.A.46.2.2 |
| pfam | B111_contig_1436 | B111_contig_1436_40 | 53045 | 54187 | + | GH18_BT1044-like |
| sulfatase | B111_contig_1436 | B111_contig_1436_41 | 54196 | 55371 | + | S1_48 |
| CAZyme | B111_contig_1436 | B111_contig_1436_42 | 55399 | 56850 | + | GH18 |
| pfam | B111_contig_1436 | B111_contig_1436_43 | 56932 | 58395 | + | BACON | BACON | BACON | BACON_2 |
| pfam | B111_contig_1436 | B111_contig_1436_44 | 58625 | 59926 | + | MFS_1 | MFS_1 |
| CAZyme | B111_contig_1436 | B111_contig_1436_45 | 59928 | 60935 | + | GH130_2 |
| CAZyme | B111_contig_1436 | B111_contig_1436_46 | 60935 | 63208 | + | GH92 |
| CAZyme | B111_contig_1436 | B111_contig_1436_47 | 63226 | 65454 | + | GH92 |
| CAZyme | B111_contig_1436 | B111_contig_1436_48 | 65468 | 67786 | + | GH92 |
Gene ID: B111_contig_1436_38
Type: TC
Location: 48023 - 51403 (+)
Type: TC
Location: 48023 - 51403 (+)
Gene ID: B111_contig_1436_39
Type: TC
Location: 51412 - 53019 (+)
Type: TC
Location: 51412 - 53019 (+)
Gene ID: B111_contig_1436_40
Type: pfam
Location: 53045 - 54187 (+)
Type: pfam
Location: 53045 - 54187 (+)
Gene ID: B111_contig_1436_41
Type: sulfatase
Location: 54196 - 55371 (+)
Type: sulfatase
Location: 54196 - 55371 (+)
Gene ID: B111_contig_1436_42
Type: CAZyme
Location: 55399 - 56850 (+)
Type: CAZyme
Location: 55399 - 56850 (+)
Gene ID: B111_contig_1436_43
Type: pfam
Location: 56932 - 58395 (+)
Type: pfam
Location: 56932 - 58395 (+)
Gene ID: B111_contig_1436_44
Type: pfam
Location: 58625 - 59926 (+)
Type: pfam
Location: 58625 - 59926 (+)
Gene ID: B111_contig_1436_45
Type: CAZyme
Location: 59928 - 60935 (+)
Type: CAZyme
Location: 59928 - 60935 (+)
Gene ID: B111_contig_1436_46
Type: CAZyme
Location: 60935 - 63208 (+)
Type: CAZyme
Location: 60935 - 63208 (+)
Gene ID: B111_contig_1436_47
Type: CAZyme
Location: 63226 - 65454 (+)
Type: CAZyme
Location: 63226 - 65454 (+)
Gene ID: B111_contig_1436_48
Type: CAZyme
Location: 65468 - 67786 (+)
Type: CAZyme
Location: 65468 - 67786 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes onderdonkii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B111_contig_1436_40 | omnivore > vegan | 1.04166 | 0.04414 |
| B111_contig_1436_41 | omnivore > vegan | 1.12584 | 0.04414 |