Cluster: B111.bin_19_CGC34
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: B111.bin_19
- CGC Family ID: CGCFAM_03400
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B111_contig_1436 | B111_contig_1436_322 | 378979 | 380976 | - | GH97 |
| TF | B111_contig_1436 | B111_contig_1436_323 | 381101 | 381685 | - | HTH_AraC | HTH_AraC |
| STP | B111_contig_1436 | B111_contig_1436_324 | 381637 | 382278 | - | Peripla_BP_3 |
| CAZyme | B111_contig_1436 | B111_contig_1436_325 | 382491 | 385502 | + | GH92 |
| pfam | B111_contig_1436 | B111_contig_1436_326 | 385514 | 386356 | + | Exo_endo_phos |
| pfam | B111_contig_1436 | B111_contig_1436_327 | 386366 | 388297 | + | Alk_phosphatase | Metalloenzyme |
| CAZyme | B111_contig_1436 | B111_contig_1436_328 | 388307 | 389920 | + | GH63 |
| pfam | B111_contig_1436 | B111_contig_1436_329 | 389958 | 390941 | + | Metallophos |
| sulfatase | B111_contig_1436 | B111_contig_1436_330 | 390949 | 391770 | + | S1_7 |
| CAZyme | B111_contig_1436 | B111_contig_1436_331 | 391853 | 393487 | + | GH20 |
| NULL(UNKNOWN) | B111_contig_1436 | B111_contig_1436_332 | 393642 | 395207 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B111_contig_1436 | B111_contig_1436_333 | 395212 | 395919 | + | TP_methylase |
| TC | B111_contig_1436 | B111_contig_1436_334 | 395931 | 397310 | + | 9.B.145.1.2 |
| pfam | B111_contig_1436 | B111_contig_1436_335 | 397326 | 398246 | + | Lip_A_acyltrans |
| CAZyme | B111_contig_1436 | B111_contig_1436_336 | 398233 | 399246 | + | GT27 |
Gene ID: B111_contig_1436_322
Type: CAZyme
Location: 378979 - 380976 (-)
Type: CAZyme
Location: 378979 - 380976 (-)
Gene ID: B111_contig_1436_323
Type: TF
Location: 381101 - 381685 (-)
Type: TF
Location: 381101 - 381685 (-)
Gene ID: B111_contig_1436_324
Type: STP
Location: 381637 - 382278 (-)
Type: STP
Location: 381637 - 382278 (-)
Gene ID: B111_contig_1436_325
Type: CAZyme
Location: 382491 - 385502 (+)
Type: CAZyme
Location: 382491 - 385502 (+)
Gene ID: B111_contig_1436_326
Type: pfam
Location: 385514 - 386356 (+)
Type: pfam
Location: 385514 - 386356 (+)
Gene ID: B111_contig_1436_327
Type: pfam
Location: 386366 - 388297 (+)
Type: pfam
Location: 386366 - 388297 (+)
Gene ID: B111_contig_1436_328
Type: CAZyme
Location: 388307 - 389920 (+)
Type: CAZyme
Location: 388307 - 389920 (+)
Gene ID: B111_contig_1436_329
Type: pfam
Location: 389958 - 390941 (+)
Type: pfam
Location: 389958 - 390941 (+)
Gene ID: B111_contig_1436_330
Type: sulfatase
Location: 390949 - 391770 (+)
Type: sulfatase
Location: 390949 - 391770 (+)
Gene ID: B111_contig_1436_331
Type: CAZyme
Location: 391853 - 393487 (+)
Type: CAZyme
Location: 391853 - 393487 (+)
Gene ID: B111_contig_1436_332
Type:
Location: 393642 - 395207 (+)
Type:
Location: 393642 - 395207 (+)
Gene ID: B111_contig_1436_333
Type: pfam
Location: 395212 - 395919 (+)
Type: pfam
Location: 395212 - 395919 (+)
Gene ID: B111_contig_1436_334
Type: TC
Location: 395931 - 397310 (+)
Type: TC
Location: 395931 - 397310 (+)
Gene ID: B111_contig_1436_335
Type: pfam
Location: 397326 - 398246 (+)
Type: pfam
Location: 397326 - 398246 (+)
Gene ID: B111_contig_1436_336
Type: CAZyme
Location: 398233 - 399246 (+)
Type: CAZyme
Location: 398233 - 399246 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes onderdonkii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.