Genome Details
Selected Rep_genome_ID: Rep_532
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900551445
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_532 | 3,344,512 | 94.8881% | 0.528607% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_532_CGC30 | CGCFAM_00001 | Yes | 9 | 6 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_532_CGC50 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_532_CGC53 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_532_CGC49 | CGCFAM_00065 | Yes | 6 | 3 | |
| Rep_532_CGC19 | CGCFAM_00068 | Yes | 5 | 2 | |
| Rep_532_CGC14 | CGCFAM_00082 | Yes | 8 | 4 | beta-mannan |
| Rep_532_CGC35 | CGCFAM_00164 | Yes | 7 | 4 | |
| Rep_532_CGC44 | CGCFAM_00221 | Yes | 7 | 4 | |
| Rep_532_CGC15 | CGCFAM_00273 | Yes | 20 | 15 | xylan |
| Rep_532_CGC46 | CGCFAM_00320 | Yes | 5 | 2 | |
| PUL0663_Rep_532_C0 | CGCFAM_00582 | Yes | 7 | 4 | arabinogalactan |
| PUL0101_Rep_532_C3 | CGCFAM_01071 | Yes | 17 | 3 | host glycan |
| Rep_532_CGC28 | CGCFAM_01220 | Yes | 5 | 2 | |
| Rep_532_CGC3 | CGCFAM_01308 | Yes | 8 | 1 | |
| Rep_532_CGC27 | CGCFAM_01986 | Yes | 11 | 6 | |
| Rep_532_CGC51 | CGCFAM_02840 | Yes | 4 | 1 | |
| Rep_532_CGC26 | CGCFAM_03975 | Yes | 17 | 5 | |
| Rep_532_CGC41 | CGCFAM_04865 | Yes | 4 | 1 | |
| Rep_532_CGC5 | CGCFAM_05943 | Yes | 12 | 2 |
Top CAZyme Families