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Cluster: Rep_532_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_532_c_1 Rep_532_c_1_41 50491 53166 + GH2
CAZyme Rep_532_c_1 Rep_532_c_1_42 53191 54747 + GH20
TF Rep_532_c_1 Rep_532_c_1_43 54735 55082 - MerR
TC Rep_532_c_1 Rep_532_c_1_44 55098 56063 - 1.A.34.1.3
pfam Rep_532_c_1 Rep_532_c_1_45 56197 58815 + tRNA-synt_2c | DHHA1 | tRNA_SAD
TC Rep_532_c_1 Rep_532_c_1_46 59024 60364 + 2.A.66.1.32
TF Rep_532_c_1 Rep_532_c_1_47 60373 61281 - HTH_AraC
pfam Rep_532_c_1 Rep_532_c_1_48 61445 62695 + OEP | OEP
TC Rep_532_c_1 Rep_532_c_1_49 62730 63620 + 3.A.1.105.4
TC Rep_532_c_1 Rep_532_c_1_50 63634 65124 + 3.A.1.105.4
TC Rep_532_c_1 Rep_532_c_1_51 65121 66242 + 3.A.1.105.4
TC Rep_532_c_1 Rep_532_c_1_52 66254 67315 + 3.A.1.105.16
Gene ID: Rep_532_c_1_41
Type: CAZyme
Location: 50491 - 53166 (+)
Gene ID: Rep_532_c_1_42
Type: CAZyme
Location: 53191 - 54747 (+)
Gene ID: Rep_532_c_1_43
Type: TF
Location: 54735 - 55082 (-)
Gene ID: Rep_532_c_1_44
Type: TC
Location: 55098 - 56063 (-)
Gene ID: Rep_532_c_1_45
Type: pfam
Location: 56197 - 58815 (+)
Gene ID: Rep_532_c_1_46
Type: TC
Location: 59024 - 60364 (+)
Gene ID: Rep_532_c_1_47
Type: TF
Location: 60373 - 61281 (-)
Gene ID: Rep_532_c_1_48
Type: pfam
Location: 61445 - 62695 (+)
Gene ID: Rep_532_c_1_49
Type: TC
Location: 62730 - 63620 (+)
Gene ID: Rep_532_c_1_50
Type: TC
Location: 63634 - 65124 (+)
Gene ID: Rep_532_c_1_51
Type: TC
Location: 65121 - 66242 (+)
Gene ID: Rep_532_c_1_52
Type: TC
Location: 66254 - 67315 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_532_c_1_52 vegetarian > vegan 1.21833 0.04565

🧭 Explore Read Mapping of CGC

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