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Cluster: Rep_532_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_532_c_18 Rep_532_c_18_19 25686 26690 + GT2
CAZyme Rep_532_c_18 Rep_532_c_18_20 26755 27849 + GT4
CAZyme Rep_532_c_18 Rep_532_c_18_21 27846 28979 + GT4
pfam Rep_532_c_18 Rep_532_c_18_22 28992 30038 + EpsG
CAZyme Rep_532_c_18 Rep_532_c_18_23 30058 31092 + GT4
CAZyme Rep_532_c_18 Rep_532_c_18_24 31104 31907 + GT2
NULL(UNKNOWN) Rep_532_c_18 Rep_532_c_18_25 31948 33033 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_532_c_18 Rep_532_c_18_26 33049 34536 + 1.B.73.2.2
pfam Rep_532_c_18 Rep_532_c_18_27 34552 34992 + Lipocalin_8
pfam Rep_532_c_18 Rep_532_c_18_28 35287 35724 + NusG
CAZyme Rep_532_c_18 Rep_532_c_18_29 35828 38176 - GT51
Gene ID: Rep_532_c_18_19
Type: CAZyme
Location: 25686 - 26690 (+)
Gene ID: Rep_532_c_18_20
Type: CAZyme
Location: 26755 - 27849 (+)
Gene ID: Rep_532_c_18_21
Type: CAZyme
Location: 27846 - 28979 (+)
Gene ID: Rep_532_c_18_22
Type: pfam
Location: 28992 - 30038 (+)
Gene ID: Rep_532_c_18_23
Type: CAZyme
Location: 30058 - 31092 (+)
Gene ID: Rep_532_c_18_24
Type: CAZyme
Location: 31104 - 31907 (+)
Gene ID: Rep_532_c_18_25
Type:
Location: 31948 - 33033 (+)
Gene ID: Rep_532_c_18_26
Type: TC
Location: 33049 - 34536 (+)
Gene ID: Rep_532_c_18_27
Type: pfam
Location: 34552 - 34992 (+)
Gene ID: Rep_532_c_18_28
Type: pfam
Location: 35287 - 35724 (+)
Gene ID: Rep_532_c_18_29
Type: CAZyme
Location: 35828 - 38176 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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