Cluster: Rep_532_CGC26
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_532
- CGC Family ID: CGCFAM_03975
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_532_c_17 | Rep_532_c_17_7 | 8112 | 9188 | + | GT4 |
| CAZyme | Rep_532_c_17 | Rep_532_c_17_8 | 9216 | 10478 | + | GT4 |
| CAZyme | Rep_532_c_17 | Rep_532_c_17_9 | 10471 | 11244 | + | GT2 |
| TC | Rep_532_c_17 | Rep_532_c_17_10 | 11288 | 13780 | - | 9.B.144.1.4 |
| pfam | Rep_532_c_17 | Rep_532_c_17_11 | 13871 | 14566 | + | PNP_UDP_1 |
| pfam | Rep_532_c_17 | Rep_532_c_17_12 | 14573 | 15058 | + | LuxS |
| CAZyme | Rep_532_c_17 | Rep_532_c_17_13 | 15251 | 17665 | - | GH2 |
| CAZyme | Rep_532_c_17 | Rep_532_c_17_14 | 17683 | 19287 | - | GH30_4 |
| TC | Rep_532_c_17 | Rep_532_c_17_15 | 19374 | 21071 | - | 8.A.46.1.3 |
| TC | Rep_532_c_17 | Rep_532_c_17_16 | 21085 | 24126 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_532_c_17 | Rep_532_c_17_17 | 24147 | 25679 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_532_c_17 | Rep_532_c_17_18 | 25854 | 29948 | + | HTH_AraC | HTH_AraC |
| TC | Rep_532_c_17 | Rep_532_c_17_19 | 30178 | 33177 | - | 2.A.6.4.3 |
| peptidase | Rep_532_c_17 | Rep_532_c_17_20 | 33383 | 35479 | - | M03.UPA |
| pfam | Rep_532_c_17 | Rep_532_c_17_21 | 35495 | 36553 | - | Exo_endo_phos |
| TC | Rep_532_c_17 | Rep_532_c_17_22 | 36550 | 37443 | - | 9.B.104.1.2 |
| TC | Rep_532_c_17 | Rep_532_c_17_23 | 37418 | 38092 | - | 9.B.104.1.5 |
Gene ID: Rep_532_c_17_7
Type: CAZyme
Location: 8112 - 9188 (+)
Type: CAZyme
Location: 8112 - 9188 (+)
Gene ID: Rep_532_c_17_8
Type: CAZyme
Location: 9216 - 10478 (+)
Type: CAZyme
Location: 9216 - 10478 (+)
Gene ID: Rep_532_c_17_9
Type: CAZyme
Location: 10471 - 11244 (+)
Type: CAZyme
Location: 10471 - 11244 (+)
Gene ID: Rep_532_c_17_10
Type: TC
Location: 11288 - 13780 (-)
Type: TC
Location: 11288 - 13780 (-)
Gene ID: Rep_532_c_17_11
Type: pfam
Location: 13871 - 14566 (+)
Type: pfam
Location: 13871 - 14566 (+)
Gene ID: Rep_532_c_17_12
Type: pfam
Location: 14573 - 15058 (+)
Type: pfam
Location: 14573 - 15058 (+)
Gene ID: Rep_532_c_17_13
Type: CAZyme
Location: 15251 - 17665 (-)
Type: CAZyme
Location: 15251 - 17665 (-)
Gene ID: Rep_532_c_17_14
Type: CAZyme
Location: 17683 - 19287 (-)
Type: CAZyme
Location: 17683 - 19287 (-)
Gene ID: Rep_532_c_17_15
Type: TC
Location: 19374 - 21071 (-)
Type: TC
Location: 19374 - 21071 (-)
Gene ID: Rep_532_c_17_16
Type: TC
Location: 21085 - 24126 (-)
Type: TC
Location: 21085 - 24126 (-)
Gene ID: Rep_532_c_17_17
Type:
Location: 24147 - 25679 (-)
Type:
Location: 24147 - 25679 (-)
Gene ID: Rep_532_c_17_18
Type: TF
Location: 25854 - 29948 (+)
Type: TF
Location: 25854 - 29948 (+)
Gene ID: Rep_532_c_17_19
Type: TC
Location: 30178 - 33177 (-)
Type: TC
Location: 30178 - 33177 (-)
Gene ID: Rep_532_c_17_20
Type: peptidase
Location: 33383 - 35479 (-)
Type: peptidase
Location: 33383 - 35479 (-)
Gene ID: Rep_532_c_17_21
Type: pfam
Location: 35495 - 36553 (-)
Type: pfam
Location: 35495 - 36553 (-)
Gene ID: Rep_532_c_17_22
Type: TC
Location: 36550 - 37443 (-)
Type: TC
Location: 36550 - 37443 (-)
Gene ID: Rep_532_c_17_23
Type: TC
Location: 37418 - 38092 (-)
Type: TC
Location: 37418 - 38092 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900551445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_532_c_17_22 | vegetarian > vegan | 1.58101 | 0.04565 |