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Cluster: Rep_532_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_532_c_6 Rep_532_c_6_32 32922 36062 + 1.B.14.6.1
pfam Rep_532_c_6 Rep_532_c_6_33 36108 37907 + SusD_RagB | SusD-like_3
CAZyme Rep_532_c_6 Rep_532_c_6_34 37995 40496 + GH43_2 | GH8
CAZyme Rep_532_c_6 Rep_532_c_6_35 40596 42308 - CBM91 | GH43_12
CAZyme Rep_532_c_6 Rep_532_c_6_36 42649 43518 + CE1
CAZyme Rep_532_c_6 Rep_532_c_6_37 43539 45989 + GH95
CAZyme Rep_532_c_6 Rep_532_c_6_38 46024 47631 + CBM91 | GH43_10
CAZyme Rep_532_c_6 Rep_532_c_6_39 47663 48760 + GH146
NULL(UNKNOWN) Rep_532_c_6 Rep_532_c_6_40 48782 49297 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_532_c_6 Rep_532_c_6_41 49294 50175 + GH43_29
CAZyme Rep_532_c_6 Rep_532_c_6_42 50532 51863 + CBM6 | GH43_29
CAZyme Rep_532_c_6 Rep_532_c_6_43 51891 53279 + CBM6 | GH43_29
CAZyme Rep_532_c_6 Rep_532_c_6_44 53297 55978 + GH31_4
CAZyme Rep_532_c_6 Rep_532_c_6_45 56023 56895 + CE6
TF Rep_532_c_6 Rep_532_c_6_46 57022 61098 - HTH_AraC
CAZyme Rep_532_c_6 Rep_532_c_6_47 61446 63077 + CE20 | CE20
TC Rep_532_c_6 Rep_532_c_6_48 63080 64576 + 2.A.2.3.4
CAZyme Rep_532_c_6 Rep_532_c_6_49 64596 65741 + GH10
CAZyme Rep_532_c_6 Rep_532_c_6_50 65790 66767 + GH43_1
CAZyme Rep_532_c_6 Rep_532_c_6_51 66760 68769 + GH67
Gene ID: Rep_532_c_6_32
Type: TC
Location: 32922 - 36062 (+)
Gene ID: Rep_532_c_6_33
Type: pfam
Location: 36108 - 37907 (+)
Gene ID: Rep_532_c_6_34
Type: CAZyme
Location: 37995 - 40496 (+)
Gene ID: Rep_532_c_6_35
Type: CAZyme
Location: 40596 - 42308 (-)
Gene ID: Rep_532_c_6_36
Type: CAZyme
Location: 42649 - 43518 (+)
Gene ID: Rep_532_c_6_37
Type: CAZyme
Location: 43539 - 45989 (+)
Gene ID: Rep_532_c_6_38
Type: CAZyme
Location: 46024 - 47631 (+)
Gene ID: Rep_532_c_6_39
Type: CAZyme
Location: 47663 - 48760 (+)
Gene ID: Rep_532_c_6_40
Type:
Location: 48782 - 49297 (+)
Gene ID: Rep_532_c_6_41
Type: CAZyme
Location: 49294 - 50175 (+)
Gene ID: Rep_532_c_6_42
Type: CAZyme
Location: 50532 - 51863 (+)
Gene ID: Rep_532_c_6_43
Type: CAZyme
Location: 51891 - 53279 (+)
Gene ID: Rep_532_c_6_44
Type: CAZyme
Location: 53297 - 55978 (+)
Gene ID: Rep_532_c_6_45
Type: CAZyme
Location: 56023 - 56895 (+)
Gene ID: Rep_532_c_6_46
Type: TF
Location: 57022 - 61098 (-)
Gene ID: Rep_532_c_6_47
Type: CAZyme
Location: 61446 - 63077 (+)
Gene ID: Rep_532_c_6_48
Type: TC
Location: 63080 - 64576 (+)
Gene ID: Rep_532_c_6_49
Type: CAZyme
Location: 64596 - 65741 (+)
Gene ID: Rep_532_c_6_50
Type: CAZyme
Location: 65790 - 66767 (+)
Gene ID: Rep_532_c_6_51
Type: CAZyme
Location: 66760 - 68769 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_532_c_6_42 vegetarian > omnivore 1.04743 0.03181

🧭 Explore Read Mapping of CGC

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