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Genome Details

Selected Rep_genome_ID: Rep_229
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→
Species
Prevotella hominis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
GCF_021637945.1_ASM2163794v1_genomic 4,420,685 97.8% 2.36% NA Africa H3AfricaPhase1
KY233_22 4,100,852 97.95% 2.03% NA Africa H3AfricaPhase2
Rep_229 3,605,430 97.8041% 0.900901% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_229_CGC15 CGCFAM_00001 Yes 6 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_229_CGC38 CGCFAM_00034 Yes 13 7
Rep_229_CGC27 CGCFAM_00049 Yes 5 1
Rep_229_CGC26 CGCFAM_00059 Yes 7 1
Rep_229_CGC36 CGCFAM_00068 Yes 10 4
Rep_229_CGC12 CGCFAM_00165 Yes 4 1
Rep_229_CGC6 CGCFAM_00372 Yes 9 4
Rep_229_CGC23 CGCFAM_00544 Yes 19 6
Rep_229_CGC10 CGCFAM_00608 Yes 5 2
Rep_229_CGC22 CGCFAM_00779 Yes 5 1
Rep_229_CGC32 CGCFAM_00830 Yes 4 1 pectin
Rep_229_CGC11 CGCFAM_01244 Yes 6 4 pectin
Rep_229_CGC40 CGCFAM_01311 Yes 17 5
Rep_229_CGC31 CGCFAM_01477 Yes 11 5
Rep_229_CGC17 CGCFAM_01638 Yes 10 2
Rep_229_CGC34 CGCFAM_02279 Yes 10 5 alpha-mannan
Rep_229_CGC3 CGCFAM_02609 Yes 4 1
Rep_229_CGC42 CGCFAM_03188 Yes 4 1
Rep_229_CGC28 CGCFAM_04556 Yes 6 1
Rep_229_CGC16 CGCFAM_05948 Yes 4 1
Rep_229_CGC14 CGCFAM_05993 Yes 3 1
Rep_229_CGC21 CGCFAM_05995 Yes 6 5
Rep_229_CGC37 CGCFAM_06676 Yes 6 1
Rep_229_CGC2 CGCFAM_09571 Yes 4 1
Top CAZyme Families