Cluster: Rep_229_CGC38
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_229
- CGC Family ID: CGCFAM_00034
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_229_c_33 | Rep_229_c_33_11 | 12123 | 13802 | - | 8.A.46.1.1 |
| TC | Rep_229_c_33 | Rep_229_c_33_12 | 13823 | 16870 | - | 1.B.14.6.1 |
| TF | Rep_229_c_33 | Rep_229_c_33_13 | 17238 | 18263 | + | LacI |
| TC | Rep_229_c_33 | Rep_229_c_33_14 | 18311 | 19642 | + | 2.A.2.6.2 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_15 | 19790 | 21916 | + | CBM20 | GH77 |
| pfam | Rep_229_c_33 | Rep_229_c_33_16 | 21913 | 22479 | + | Glyco_hydro_77 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_17 | 22710 | 24821 | + | GH97 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_18 | 25115 | 27154 | + | GH13_14 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_19 | 27241 | 29166 | + | GH13_46 |
| TF | Rep_229_c_33 | Rep_229_c_33_20 | 29332 | 32304 | + | HTH_AraC |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_21 | 32529 | 35180 | + | GH43_4 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_22 | 35226 | 36269 | + | GH43_5 |
| CAZyme | Rep_229_c_33 | Rep_229_c_33_23 | 36450 | 38888 | - | GH51_2 |
Gene ID: Rep_229_c_33_11
Type: TC
Location: 12123 - 13802 (-)
Type: TC
Location: 12123 - 13802 (-)
Gene ID: Rep_229_c_33_12
Type: TC
Location: 13823 - 16870 (-)
Type: TC
Location: 13823 - 16870 (-)
Gene ID: Rep_229_c_33_13
Type: TF
Location: 17238 - 18263 (+)
Type: TF
Location: 17238 - 18263 (+)
Gene ID: Rep_229_c_33_14
Type: TC
Location: 18311 - 19642 (+)
Type: TC
Location: 18311 - 19642 (+)
Gene ID: Rep_229_c_33_15
Type: CAZyme
Location: 19790 - 21916 (+)
Type: CAZyme
Location: 19790 - 21916 (+)
Gene ID: Rep_229_c_33_16
Type: pfam
Location: 21913 - 22479 (+)
Type: pfam
Location: 21913 - 22479 (+)
Gene ID: Rep_229_c_33_17
Type: CAZyme
Location: 22710 - 24821 (+)
Type: CAZyme
Location: 22710 - 24821 (+)
Gene ID: Rep_229_c_33_18
Type: CAZyme
Location: 25115 - 27154 (+)
Type: CAZyme
Location: 25115 - 27154 (+)
Gene ID: Rep_229_c_33_19
Type: CAZyme
Location: 27241 - 29166 (+)
Type: CAZyme
Location: 27241 - 29166 (+)
Gene ID: Rep_229_c_33_20
Type: TF
Location: 29332 - 32304 (+)
Type: TF
Location: 29332 - 32304 (+)
Gene ID: Rep_229_c_33_21
Type: CAZyme
Location: 32529 - 35180 (+)
Type: CAZyme
Location: 32529 - 35180 (+)
Gene ID: Rep_229_c_33_22
Type: CAZyme
Location: 35226 - 36269 (+)
Type: CAZyme
Location: 35226 - 36269 (+)
Gene ID: Rep_229_c_33_23
Type: CAZyme
Location: 36450 - 38888 (-)
Type: CAZyme
Location: 36450 - 38888 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_229_c_33_11 | vegetarian > omnivore | 2.06739 | 0.02010 |
| Rep_229_c_33_11 | vegetarian > vegan | 2.69211 | 0.00667 |
| Rep_229_c_33_12 | vegetarian > omnivore | 1.47106 | 0.02010 |
| Rep_229_c_33_12 | vegetarian > vegan | 1.55237 | 0.00667 |
| Rep_229_c_33_16 | vegetarian > vegan | 1.35010 | 0.00667 |