Cluster: Rep_229_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_229
- CGC Family ID: CGCFAM_04556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_229_c_17 | Rep_229_c_17_22 | 29203 | 30591 | + | GT19 |
| pfam | Rep_229_c_17 | Rep_229_c_17_23 | 30899 | 31774 | - | CTP_transf_1 |
| TC | Rep_229_c_17 | Rep_229_c_17_24 | 31786 | 33864 | - | 3.A.25.1.1 |
| pfam | Rep_229_c_17 | Rep_229_c_17_25 | 34009 | 34368 | - | RsfS |
| pfam | Rep_229_c_17 | Rep_229_c_17_26 | 34928 | 36592 | - | PseudoU_synth_2 |
| TC | Rep_229_c_17 | Rep_229_c_17_27 | 36794 | 37684 | + | 2.A.7.3.40 |
Gene ID: Rep_229_c_17_22
Type: CAZyme
Location: 29203 - 30591 (+)
Type: CAZyme
Location: 29203 - 30591 (+)
Gene ID: Rep_229_c_17_23
Type: pfam
Location: 30899 - 31774 (-)
Type: pfam
Location: 30899 - 31774 (-)
Gene ID: Rep_229_c_17_24
Type: TC
Location: 31786 - 33864 (-)
Type: TC
Location: 31786 - 33864 (-)
Gene ID: Rep_229_c_17_25
Type: pfam
Location: 34009 - 34368 (-)
Type: pfam
Location: 34009 - 34368 (-)
Gene ID: Rep_229_c_17_26
Type: pfam
Location: 34928 - 36592 (-)
Type: pfam
Location: 34928 - 36592 (-)
Gene ID: Rep_229_c_17_27
Type: TC
Location: 36794 - 37684 (+)
Type: TC
Location: 36794 - 37684 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_229_c_17_23 | vegetarian > vegan | 1.27205 | 0.00667 |
| Rep_229_c_17_25 | vegetarian > omnivore | 1.39896 | 0.02010 |
| Rep_229_c_17_25 | vegetarian > vegan | 2.65274 | 0.00667 |
| Rep_229_c_17_27 | vegetarian > omnivore | 1.66187 | 0.02010 |