Cluster: Rep_229_CGC40
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_229
- CGC Family ID: CGCFAM_01311
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_229_c_35 | Rep_229_c_35_8 | 6492 | 6728 | - | 3.D.1.6.3 |
| pfam | Rep_229_c_35 | Rep_229_c_35_9 | 6955 | 7560 | + | DUF4254 |
| CAZyme | Rep_229_c_35 | Rep_229_c_35_10 | 7680 | 8753 | + | GT9 |
| peptidase | Rep_229_c_35 | Rep_229_c_35_11 | 9305 | 10297 | + | U32.UPW |
| NULL(UNKNOWN) | Rep_229_c_35 | Rep_229_c_35_12 | 10694 | 11818 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_229_c_35 | Rep_229_c_35_13 | 11895 | 12875 | - | GT2 |
| CAZyme | Rep_229_c_35 | Rep_229_c_35_14 | 12830 | 13819 | - | GT2 |
| pfam | Rep_229_c_35 | Rep_229_c_35_15 | 13960 | 15546 | - | DUF6056 |
| CAZyme | Rep_229_c_35 | Rep_229_c_35_16 | 15605 | 16570 | - | GT2 |
| NULL(UNKNOWN) | Rep_229_c_35 | Rep_229_c_35_17 | 16531 | 17949 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_229_c_35 | Rep_229_c_35_18 | 17946 | 19964 | - | Reg_prop | PorZ_N_b_propeller |
| CAZyme | Rep_229_c_35 | Rep_229_c_35_19 | 20005 | 20895 | - | GT2 |
| sulfatase | Rep_229_c_35 | Rep_229_c_35_20 | 20898 | 21506 | - | S1_7 |
| TC | Rep_229_c_35 | Rep_229_c_35_21 | 21579 | 22532 | - | 2.A.115.1.2 |
| pfam | Rep_229_c_35 | Rep_229_c_35_22 | 22745 | 25603 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| pfam | Rep_229_c_35 | Rep_229_c_35_23 | 26216 | 27508 | + | AAA_14 | DUF4143 |
| TC | Rep_229_c_35 | Rep_229_c_35_24 | 27817 | 28785 | - | 8.A.5.1.3 |
Gene ID: Rep_229_c_35_8
Type: TC
Location: 6492 - 6728 (-)
Type: TC
Location: 6492 - 6728 (-)
Gene ID: Rep_229_c_35_9
Type: pfam
Location: 6955 - 7560 (+)
Type: pfam
Location: 6955 - 7560 (+)
Gene ID: Rep_229_c_35_10
Type: CAZyme
Location: 7680 - 8753 (+)
Type: CAZyme
Location: 7680 - 8753 (+)
Gene ID: Rep_229_c_35_11
Type: peptidase
Location: 9305 - 10297 (+)
Type: peptidase
Location: 9305 - 10297 (+)
Gene ID: Rep_229_c_35_12
Type:
Location: 10694 - 11818 (-)
Type:
Location: 10694 - 11818 (-)
Gene ID: Rep_229_c_35_13
Type: CAZyme
Location: 11895 - 12875 (-)
Type: CAZyme
Location: 11895 - 12875 (-)
Gene ID: Rep_229_c_35_14
Type: CAZyme
Location: 12830 - 13819 (-)
Type: CAZyme
Location: 12830 - 13819 (-)
Gene ID: Rep_229_c_35_15
Type: pfam
Location: 13960 - 15546 (-)
Type: pfam
Location: 13960 - 15546 (-)
Gene ID: Rep_229_c_35_16
Type: CAZyme
Location: 15605 - 16570 (-)
Type: CAZyme
Location: 15605 - 16570 (-)
Gene ID: Rep_229_c_35_17
Type:
Location: 16531 - 17949 (-)
Type:
Location: 16531 - 17949 (-)
Gene ID: Rep_229_c_35_18
Type: pfam
Location: 17946 - 19964 (-)
Type: pfam
Location: 17946 - 19964 (-)
Gene ID: Rep_229_c_35_19
Type: CAZyme
Location: 20005 - 20895 (-)
Type: CAZyme
Location: 20005 - 20895 (-)
Gene ID: Rep_229_c_35_20
Type: sulfatase
Location: 20898 - 21506 (-)
Type: sulfatase
Location: 20898 - 21506 (-)
Gene ID: Rep_229_c_35_21
Type: TC
Location: 21579 - 22532 (-)
Type: TC
Location: 21579 - 22532 (-)
Gene ID: Rep_229_c_35_22
Type: pfam
Location: 22745 - 25603 (-)
Type: pfam
Location: 22745 - 25603 (-)
Gene ID: Rep_229_c_35_23
Type: pfam
Location: 26216 - 27508 (+)
Type: pfam
Location: 26216 - 27508 (+)
Gene ID: Rep_229_c_35_24
Type: TC
Location: 27817 - 28785 (-)
Type: TC
Location: 27817 - 28785 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_229_c_35_12 | vegetarian > omnivore | 1.15735 | 0.02010 |
| Rep_229_c_35_12 | vegetarian > vegan | 1.19335 | 0.00667 |
| Rep_229_c_35_13 | vegetarian > vegan | 1.69634 | 0.00667 |
| Rep_229_c_35_20 | vegetarian > vegan | 1.27099 | 0.00667 |