dbCAN Logo

Cluster: Rep_229_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_229_c_20 Rep_229_c_20_1 561 3875 + 1.B.14.6.1
pfam Rep_229_c_20 Rep_229_c_20_2 3895 6216 + SusD_RagB | SusD-like_3
TC Rep_229_c_20 Rep_229_c_20_3 6259 9129 + 1.B.14.6.1
pfam Rep_229_c_20 Rep_229_c_20_4 9148 10974 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_229_c_20 Rep_229_c_20_5 11082 13199 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_229_c_20 Rep_229_c_20_6 13559 18169 + PL11
CAZyme Rep_229_c_20 Rep_229_c_20_7 18465 20525 + PL11_1
CAZyme Rep_229_c_20 Rep_229_c_20_8 21099 22772 + CE12 | CE12
CAZyme Rep_229_c_20 Rep_229_c_20_9 22803 25358 + GH2
NULL(UNKNOWN) Rep_229_c_20 Rep_229_c_20_10 25413 25661 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_229_c_20 Rep_229_c_20_11 25822 27960 + GH127
Gene ID: Rep_229_c_20_1
Type: TC
Location: 561 - 3875 (+)
Gene ID: Rep_229_c_20_2
Type: pfam
Location: 3895 - 6216 (+)
Gene ID: Rep_229_c_20_3
Type: TC
Location: 6259 - 9129 (+)
Gene ID: Rep_229_c_20_4
Type: pfam
Location: 9148 - 10974 (+)
Gene ID: Rep_229_c_20_5
Type:
Location: 11082 - 13199 (+)
Gene ID: Rep_229_c_20_6
Type: CAZyme
Location: 13559 - 18169 (+)
Gene ID: Rep_229_c_20_7
Type: CAZyme
Location: 18465 - 20525 (+)
Gene ID: Rep_229_c_20_8
Type: CAZyme
Location: 21099 - 22772 (+)
Gene ID: Rep_229_c_20_9
Type: CAZyme
Location: 22803 - 25358 (+)
Gene ID: Rep_229_c_20_10
Type:
Location: 25413 - 25661 (-)
Gene ID: Rep_229_c_20_11
Type: CAZyme
Location: 25822 - 27960 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_229_c_20_6 vegetarian > omnivore 1.17682 0.02010

🧭 Explore Read Mapping of CGC

← Back to Cluster List