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Cluster: Rep_229_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_229_c_15 Rep_229_c_15_40 46078 46968 + GH25
pfam Rep_229_c_15 Rep_229_c_15_41 47106 47972 - Ubie_methyltran | MTS | PrmA | Methyltransf_11 | Methyltransf_25 | Methyltransf_31
NULL(UNKNOWN) Rep_229_c_15 Rep_229_c_15_42 48155 49114 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_229_c_15 Rep_229_c_15_43 49154 50737 + 1.B.9.4.2
TC Rep_229_c_15 Rep_229_c_15_44 51124 52143 + 3.A.1.13.2
pfam Rep_229_c_15 Rep_229_c_15_45 52207 54750 - DEAD | Helicase_C | ResIII | HrpB_C | AAA_19
TC Rep_229_c_15 Rep_229_c_15_46 54818 56455 - 3.A.1.121.4
Gene ID: Rep_229_c_15_40
Type: CAZyme
Location: 46078 - 46968 (+)
Gene ID: Rep_229_c_15_41
Type: pfam
Location: 47106 - 47972 (-)
Gene ID: Rep_229_c_15_42
Type:
Location: 48155 - 49114 (+)
Gene ID: Rep_229_c_15_43
Type: TC
Location: 49154 - 50737 (+)
Gene ID: Rep_229_c_15_44
Type: TC
Location: 51124 - 52143 (+)
Gene ID: Rep_229_c_15_45
Type: pfam
Location: 52207 - 54750 (-)
Gene ID: Rep_229_c_15_46
Type: TC
Location: 54818 - 56455 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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