Cluster: Rep_229_CGC23
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_229
- CGC Family ID: CGCFAM_00544
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_229_c_12 | Rep_229_c_12_22 | 24630 | 27083 | + | GH95 |
| TC | Rep_229_c_12 | Rep_229_c_12_23 | 27231 | 30281 | + | 1.B.14.6.1 |
| TC | Rep_229_c_12 | Rep_229_c_12_24 | 30303 | 31925 | + | 8.A.46.1.3 |
| pfam | Rep_229_c_12 | Rep_229_c_12_25 | 32446 | 33582 | + | RVT_1 |
| CAZyme | Rep_229_c_12 | Rep_229_c_12_26 | 33977 | 36157 | - | GH36 |
| pfam | Rep_229_c_12 | Rep_229_c_12_27 | 36237 | 38279 | - | FG-GAP_3 | FG-GAP_3 |
| pfam | Rep_229_c_12 | Rep_229_c_12_28 | 38411 | 40078 | - | SusD_RagB |
| TC | Rep_229_c_12 | Rep_229_c_12_29 | 40121 | 43222 | - | 1.B.14.6.1 |
| pfam | Rep_229_c_12 | Rep_229_c_12_30 | 43255 | 44847 | - | Fasciclin |
| pfam | Rep_229_c_12 | Rep_229_c_12_31 | 44888 | 46714 | - | Fasciclin |
| TC | Rep_229_c_12 | Rep_229_c_12_32 | 46753 | 48312 | - | 8.A.46.1.4 |
| TC | Rep_229_c_12 | Rep_229_c_12_33 | 48364 | 51654 | - | 1.B.14.6.1 |
| pfam | Rep_229_c_12 | Rep_229_c_12_34 | 51689 | 54256 | - | Fasciclin | Fasciclin |
| TF | Rep_229_c_12 | Rep_229_c_12_35 | 54517 | 58518 | + | HTH_AraC |
| CAZyme | Rep_229_c_12 | Rep_229_c_12_36 | 58575 | 60770 | - | GH92 |
| CAZyme | Rep_229_c_12 | Rep_229_c_12_37 | 60816 | 62267 | - | CE20 |
| CAZyme | Rep_229_c_12 | Rep_229_c_12_38 | 62332 | 64698 | - | GH36 |
| CAZyme | Rep_229_c_12 | Rep_229_c_12_39 | 64772 | 66721 | - | GH27 |
| TC | Rep_229_c_12 | Rep_229_c_12_40 | 66989 | 67939 | + | 2.A.28.2.4 |
Gene ID: Rep_229_c_12_22
Type: CAZyme
Location: 24630 - 27083 (+)
Type: CAZyme
Location: 24630 - 27083 (+)
Gene ID: Rep_229_c_12_23
Type: TC
Location: 27231 - 30281 (+)
Type: TC
Location: 27231 - 30281 (+)
Gene ID: Rep_229_c_12_24
Type: TC
Location: 30303 - 31925 (+)
Type: TC
Location: 30303 - 31925 (+)
Gene ID: Rep_229_c_12_25
Type: pfam
Location: 32446 - 33582 (+)
Type: pfam
Location: 32446 - 33582 (+)
Gene ID: Rep_229_c_12_26
Type: CAZyme
Location: 33977 - 36157 (-)
Type: CAZyme
Location: 33977 - 36157 (-)
Gene ID: Rep_229_c_12_27
Type: pfam
Location: 36237 - 38279 (-)
Type: pfam
Location: 36237 - 38279 (-)
Gene ID: Rep_229_c_12_28
Type: pfam
Location: 38411 - 40078 (-)
Type: pfam
Location: 38411 - 40078 (-)
Gene ID: Rep_229_c_12_29
Type: TC
Location: 40121 - 43222 (-)
Type: TC
Location: 40121 - 43222 (-)
Gene ID: Rep_229_c_12_30
Type: pfam
Location: 43255 - 44847 (-)
Type: pfam
Location: 43255 - 44847 (-)
Gene ID: Rep_229_c_12_31
Type: pfam
Location: 44888 - 46714 (-)
Type: pfam
Location: 44888 - 46714 (-)
Gene ID: Rep_229_c_12_32
Type: TC
Location: 46753 - 48312 (-)
Type: TC
Location: 46753 - 48312 (-)
Gene ID: Rep_229_c_12_33
Type: TC
Location: 48364 - 51654 (-)
Type: TC
Location: 48364 - 51654 (-)
Gene ID: Rep_229_c_12_34
Type: pfam
Location: 51689 - 54256 (-)
Type: pfam
Location: 51689 - 54256 (-)
Gene ID: Rep_229_c_12_35
Type: TF
Location: 54517 - 58518 (+)
Type: TF
Location: 54517 - 58518 (+)
Gene ID: Rep_229_c_12_36
Type: CAZyme
Location: 58575 - 60770 (-)
Type: CAZyme
Location: 58575 - 60770 (-)
Gene ID: Rep_229_c_12_37
Type: CAZyme
Location: 60816 - 62267 (-)
Type: CAZyme
Location: 60816 - 62267 (-)
Gene ID: Rep_229_c_12_38
Type: CAZyme
Location: 62332 - 64698 (-)
Type: CAZyme
Location: 62332 - 64698 (-)
Gene ID: Rep_229_c_12_39
Type: CAZyme
Location: 64772 - 66721 (-)
Type: CAZyme
Location: 64772 - 66721 (-)
Gene ID: Rep_229_c_12_40
Type: TC
Location: 66989 - 67939 (+)
Type: TC
Location: 66989 - 67939 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.