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Cluster: Rep_229_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_229_c_16 Rep_229_c_16_50 56648 57394 + GT2
TC Rep_229_c_16 Rep_229_c_16_51 57418 58029 + 9.B.18.1.3
STP Rep_229_c_16 Rep_229_c_16_52 58079 59329 + Aminotran_1_2
TC Rep_229_c_16 Rep_229_c_16_53 59369 61273 + 9.B.18.2.1
TC Rep_229_c_16 Rep_229_c_16_54 61320 61940 + 9.B.18.1.3
Gene ID: Rep_229_c_16_50
Type: CAZyme
Location: 56648 - 57394 (+)
Gene ID: Rep_229_c_16_51
Type: TC
Location: 57418 - 58029 (+)
Gene ID: Rep_229_c_16_52
Type: STP
Location: 58079 - 59329 (+)
Gene ID: Rep_229_c_16_53
Type: TC
Location: 59369 - 61273 (+)
Gene ID: Rep_229_c_16_54
Type: TC
Location: 61320 - 61940 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_229_c_16_51 vegetarian > vegan 2.83010 0.00667
Rep_229_c_16_52 vegetarian > vegan 1.05208 0.00667
Rep_229_c_16_53 vegetarian > vegan 1.62551 0.00667
Rep_229_c_16_54 vegetarian > vegan 1.03286 0.00667

🧭 Explore Read Mapping of CGC

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