Genome Details
Selected Rep_genome_ID: HRGMv2_4313
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Species
Merdiplasma excrementigallinarum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4313 | 2,532,448 | 93.51% | 1.265% | South Korea | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4313_CGC14 | CGCFAM_00007 | Yes | 5 | 2 | |
| HRGMv2_4313_CGC7 | CGCFAM_00009 | Yes | 15 | 5 | |
| HRGMv2_4313_CGC2 | CGCFAM_00010 | Yes | 8 | 1 | alpha-glucan |
| HRGMv2_4313_CGC12 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_4313_CGC1 | CGCFAM_00149 | Yes | 4 | 1 | |
| HRGMv2_4313_CGC6 | CGCFAM_00706 | Yes | 7 | 1 | |
| HRGMv2_4313_CGC11 | CGCFAM_01215 | Yes | 3 | 1 | |
| HRGMv2_4313_CGC8 | CGCFAM_01758 | Yes | 6 | 2 | |
| HRGMv2_4313_CGC9 | CGCFAM_02351 | Yes | 3 | 1 | |
| HRGMv2_4313_CGC4 | CGCFAM_05288 | Yes | 10 | 1 | |
| HRGMv2_4313_CGC3 | CGCFAM_08182 | Yes | 6 | 2 | |
| HRGMv2_4313_CGC13 | CGCFAM_10568 | Yes | 4 | 1 |
Top CAZyme Families