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Cluster: HRGMv2_4313_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4313_6 HRGMv2_4313_6_41 41471 41749 + 3.A.2.1.2
pfam HRGMv2_4313_6 HRGMv2_4313_6_42 41793 42296 + ATP-synt_B
TC HRGMv2_4313_6 HRGMv2_4313_6_43 42293 42829 + 3.A.2.1.1
TC HRGMv2_4313_6 HRGMv2_4313_6_44 42846 44372 + 3.A.2.1.5
TC HRGMv2_4313_6 HRGMv2_4313_6_45 44375 45235 + 3.A.2.1.5
TC HRGMv2_4313_6 HRGMv2_4313_6_46 45238 46167 + 3.A.2.1.5
TC HRGMv2_4313_6 HRGMv2_4313_6_47 46139 46642 + 3.A.2.1.2
pfam HRGMv2_4313_6 HRGMv2_4313_6_48 46655 47053 + ATP-synt_DE | ATP-synt_DE_N
pfam HRGMv2_4313_6 HRGMv2_4313_6_49 47090 48310 + GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | ATP-grasp_4 | LAL_C2
CAZyme HRGMv2_4313_6 HRGMv2_4313_6_50 48367 49359 + GT2
Gene ID: HRGMv2_4313_6_41
Type: TC
Location: 41471 - 41749 (+)
Gene ID: HRGMv2_4313_6_42
Type: pfam
Location: 41793 - 42296 (+)
Gene ID: HRGMv2_4313_6_43
Type: TC
Location: 42293 - 42829 (+)
Gene ID: HRGMv2_4313_6_44
Type: TC
Location: 42846 - 44372 (+)
Gene ID: HRGMv2_4313_6_45
Type: TC
Location: 44375 - 45235 (+)
Gene ID: HRGMv2_4313_6_46
Type: TC
Location: 45238 - 46167 (+)
Gene ID: HRGMv2_4313_6_47
Type: TC
Location: 46139 - 46642 (+)
Gene ID: HRGMv2_4313_6_48
Type: pfam
Location: 46655 - 47053 (+)
Gene ID: HRGMv2_4313_6_49
Type: pfam
Location: 47090 - 48310 (+)
Gene ID: HRGMv2_4313_6_50
Type: CAZyme
Location: 48367 - 49359 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4313_6_41 vegan > omnivore 1.65915 0.01497

🧭 Explore Read Mapping of CGC

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