Cluster: HRGMv2_4313_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4313
- CGC Family ID: CGCFAM_10568
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4313_71 | HRGMv2_4313_71_10 | 7405 | 9117 | + | GH18 |
| pfam | HRGMv2_4313_71 | HRGMv2_4313_71_11 | 9160 | 10602 | + | OKR_DC_1 |
| pfam | HRGMv2_4313_71 | HRGMv2_4313_71_12 | 10619 | 11239 | + | Guanylate_kin |
| TC | HRGMv2_4313_71 | HRGMv2_4313_71_13 | 11371 | 12510 | + | 3.B.1.1.5 |
Gene ID: HRGMv2_4313_71_10
Type: CAZyme
Location: 7405 - 9117 (+)
Type: CAZyme
Location: 7405 - 9117 (+)
Gene ID: HRGMv2_4313_71_11
Type: pfam
Location: 9160 - 10602 (+)
Type: pfam
Location: 9160 - 10602 (+)
Gene ID: HRGMv2_4313_71_12
Type: pfam
Location: 10619 - 11239 (+)
Type: pfam
Location: 10619 - 11239 (+)
Gene ID: HRGMv2_4313_71_13
Type: TC
Location: 11371 - 12510 (+)
Type: TC
Location: 11371 - 12510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Species
Merdiplasma excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4313_71_13 | vegetarian > vegan | 1.00200 | 0.02695 |