Cluster: HRGMv2_4313_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4313
- CGC Family ID: CGCFAM_01758
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4313_16 | HRGMv2_4313_16_8 | 8121 | 11318 | + | GH3 |
| TC | HRGMv2_4313_16 | HRGMv2_4313_16_9 | 11489 | 15091 | + | 3.A.1.122.2 |
| pfam | HRGMv2_4313_16 | HRGMv2_4313_16_10 | 15116 | 16393 | + | SDH_alpha |
| pfam | HRGMv2_4313_16 | HRGMv2_4313_16_11 | 16553 | 18127 | + | Alk_phosphatase | Alk_phosphatase |
| TC | HRGMv2_4313_16 | HRGMv2_4313_16_12 | 18142 | 19326 | + | 9.B.141.1.1 |
| CAZyme | HRGMv2_4313_16 | HRGMv2_4313_16_13 | 19724 | 20848 | + | GT28 |
Gene ID: HRGMv2_4313_16_8
Type: CAZyme
Location: 8121 - 11318 (+)
Type: CAZyme
Location: 8121 - 11318 (+)
Gene ID: HRGMv2_4313_16_9
Type: TC
Location: 11489 - 15091 (+)
Type: TC
Location: 11489 - 15091 (+)
Gene ID: HRGMv2_4313_16_10
Type: pfam
Location: 15116 - 16393 (+)
Type: pfam
Location: 15116 - 16393 (+)
Gene ID: HRGMv2_4313_16_11
Type: pfam
Location: 16553 - 18127 (+)
Type: pfam
Location: 16553 - 18127 (+)
Gene ID: HRGMv2_4313_16_12
Type: TC
Location: 18142 - 19326 (+)
Type: TC
Location: 18142 - 19326 (+)
Gene ID: HRGMv2_4313_16_13
Type: CAZyme
Location: 19724 - 20848 (+)
Type: CAZyme
Location: 19724 - 20848 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Species
Merdiplasma excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.