Cluster: HRGMv2_4313_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4313
- CGC Family ID: CGCFAM_08182
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4313_5 | HRGMv2_4313_5_13 | 15192 | 17156 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4313_5 | HRGMv2_4313_5_14 | 17236 | 18588 | - | GH13_20 |
| STP | HRGMv2_4313_5 | HRGMv2_4313_5_15 | 18618 | 19190 | - | TetR_N |
| pfam | HRGMv2_4313_5 | HRGMv2_4313_5_16 | 19322 | 21859 | - | TPR_8 | TPR_16 |
| TC | HRGMv2_4313_5 | HRGMv2_4313_5_17 | 21998 | 23434 | - | 2.A.38.1.1 |
| TC | HRGMv2_4313_5 | HRGMv2_4313_5_18 | 23445 | 24806 | - | 2.A.38.1.1 |
Gene ID: HRGMv2_4313_5_13
Type: CAZyme
Location: 15192 - 17156 (-)
Type: CAZyme
Location: 15192 - 17156 (-)
Gene ID: HRGMv2_4313_5_14
Type: CAZyme
Location: 17236 - 18588 (-)
Type: CAZyme
Location: 17236 - 18588 (-)
Gene ID: HRGMv2_4313_5_15
Type: STP
Location: 18618 - 19190 (-)
Type: STP
Location: 18618 - 19190 (-)
Gene ID: HRGMv2_4313_5_16
Type: pfam
Location: 19322 - 21859 (-)
Type: pfam
Location: 19322 - 21859 (-)
Gene ID: HRGMv2_4313_5_17
Type: TC
Location: 21998 - 23434 (-)
Type: TC
Location: 21998 - 23434 (-)
Gene ID: HRGMv2_4313_5_18
Type: TC
Location: 23445 - 24806 (-)
Type: TC
Location: 23445 - 24806 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Species
Merdiplasma excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.