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Cluster: HRGMv2_4313_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4313_2 HRGMv2_4313_2_20 16674 17999 + 3.A.1.1.45
TC HRGMv2_4313_2 HRGMv2_4313_2_21 18127 18978 + 3.A.1.1.45
TC HRGMv2_4313_2 HRGMv2_4313_2_22 18975 19817 + 3.A.1.1.45
TF HRGMv2_4313_2 HRGMv2_4313_2_23 19849 20871 + LacI
CAZyme HRGMv2_4313_2 HRGMv2_4313_2_24 20919 22400 + GH77
STP HRGMv2_4313_2 HRGMv2_4313_2_25 22769 23569 + Fer4
pfam HRGMv2_4313_2 HRGMv2_4313_2_26 23573 24238 + Hydrolase | Hydrolase_like | HAD_2
TC HRGMv2_4313_2 HRGMv2_4313_2_27 24304 25686 + 2.A.66.1.13
Gene ID: HRGMv2_4313_2_20
Type: TC
Location: 16674 - 17999 (+)
Gene ID: HRGMv2_4313_2_21
Type: TC
Location: 18127 - 18978 (+)
Gene ID: HRGMv2_4313_2_22
Type: TC
Location: 18975 - 19817 (+)
Gene ID: HRGMv2_4313_2_23
Type: TF
Location: 19849 - 20871 (+)
Gene ID: HRGMv2_4313_2_24
Type: CAZyme
Location: 20919 - 22400 (+)
Gene ID: HRGMv2_4313_2_25
Type: STP
Location: 22769 - 23569 (+)
Gene ID: HRGMv2_4313_2_26
Type: pfam
Location: 23573 - 24238 (+)
Gene ID: HRGMv2_4313_2_27
Type: TC
Location: 24304 - 25686 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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