Genome Details
Selected Rep_genome_ID: HRGMv2_3874
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321185
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3874 | 2,848,765 | 96.28% | 1.121% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3874_CGC10 | CGCFAM_00016 | Yes | 7 | 2 | host glycan |
| HRGMv2_3874_CGC19 | CGCFAM_00023 | Yes | 7 | 4 | |
| HRGMv2_3874_CGC26 | CGCFAM_00031 | Yes | 9 | 5 | pectin/galactan |
| HRGMv2_3874_CGC30 | CGCFAM_00095 | Yes | 9 | 5 | |
| HRGMv2_3874_CGC38 | CGCFAM_00128 | Yes | 9 | 4 | |
| HRGMv2_3874_CGC36 | CGCFAM_00475 | Yes | 13 | 1 | |
| HRGMv2_3874_CGC5 | CGCFAM_00540 | Yes | 11 | 5 | pectin |
| HRGMv2_3874_CGC35 | CGCFAM_00646 | Yes | 9 | 4 | arabinogalactan |
| HRGMv2_3874_CGC6 | CGCFAM_00734 | Yes | 6 | 1 | |
| HRGMv2_3874_CGC32 | CGCFAM_00867 | Yes | 4 | 3 | |
| HRGMv2_3874_CGC15 | CGCFAM_00915 | Yes | 12 | 4 | |
| HRGMv2_3874_CGC4 | CGCFAM_01056 | Yes | 3 | 1 | |
| HRGMv2_3874_CGC9 | CGCFAM_02171 | Yes | 9 | 1 | |
| HRGMv2_3874_CGC16 | CGCFAM_02852 | Yes | 3 | 1 | |
| HRGMv2_3874_CGC22 | CGCFAM_02952 | Yes | 6 | 2 | |
| HRGMv2_3874_CGC28 | CGCFAM_05660 | Yes | 6 | 2 | |
| HRGMv2_3874_CGC7 | CGCFAM_09277 | Yes | 4 | 3 | |
| HRGMv2_3874_CGC21 | CGCFAM_09640 | Yes | 7 | 1 | |
| HRGMv2_3874_CGC13 | CGCFAM_09642 | Yes | 18 | 7 |
Top CAZyme Families