Cluster: HRGMv2_3874_CGC13
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3874
- CGC Family ID: CGCFAM_09642
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_79 | 106051 | 108096 | - | GH13_8 |
| TC | HRGMv2_3874_6 | HRGMv2_3874_6_80 | 108337 | 110025 | + | 2.A.17.1.6 |
| STP | HRGMv2_3874_6 | HRGMv2_3874_6_81 | 110178 | 110804 | + | TetR_N |
| TC | HRGMv2_3874_6 | HRGMv2_3874_6_82 | 110846 | 112165 | + | 1.B.17.2.10 |
| TC | HRGMv2_3874_6 | HRGMv2_3874_6_83 | 112277 | 113290 | + | 2.A.6.3.7 |
| TC | HRGMv2_3874_6 | HRGMv2_3874_6_84 | 113303 | 116443 | + | 2.A.6.3.6 |
| NULL(UNKNOWN) | HRGMv2_3874_6 | HRGMv2_3874_6_85 | 116466 | 116759 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_86 | 116994 | 118973 | - | GH97 |
| pfam | HRGMv2_3874_6 | HRGMv2_3874_6_87 | 119202 | 119987 | + | Lactamase_B | Lactamase_B_2 |
| sulfatase | HRGMv2_3874_6 | HRGMv2_3874_6_88 | 120004 | 120819 | + | S1_4 |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_89 | 121108 | 122304 | + | GH88 |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_90 | 122345 | 125263 | + | PL12_2 |
| pfam | HRGMv2_3874_6 | HRGMv2_3874_6_91 | 125285 | 127399 | + | SGBP_BT4661-like |
| TC | HRGMv2_3874_6 | HRGMv2_3874_6_92 | 127876 | 130575 | + | 1.B.14.6.1 |
| sulfatase | HRGMv2_3874_6 | HRGMv2_3874_6_93 | 130591 | 132234 | + | S1_27 |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_94 | 132344 | 133489 | - | PL13 |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_95 | 133489 | 135492 | - | PL12_2 |
| CAZyme | HRGMv2_3874_6 | HRGMv2_3874_6_96 | 135532 | 137538 | - | PL12_2 |
Gene ID: HRGMv2_3874_6_79
Type: CAZyme
Location: 106051 - 108096 (-)
Type: CAZyme
Location: 106051 - 108096 (-)
Gene ID: HRGMv2_3874_6_80
Type: TC
Location: 108337 - 110025 (+)
Type: TC
Location: 108337 - 110025 (+)
Gene ID: HRGMv2_3874_6_81
Type: STP
Location: 110178 - 110804 (+)
Type: STP
Location: 110178 - 110804 (+)
Gene ID: HRGMv2_3874_6_82
Type: TC
Location: 110846 - 112165 (+)
Type: TC
Location: 110846 - 112165 (+)
Gene ID: HRGMv2_3874_6_83
Type: TC
Location: 112277 - 113290 (+)
Type: TC
Location: 112277 - 113290 (+)
Gene ID: HRGMv2_3874_6_84
Type: TC
Location: 113303 - 116443 (+)
Type: TC
Location: 113303 - 116443 (+)
Gene ID: HRGMv2_3874_6_85
Type:
Location: 116466 - 116759 (+)
Type:
Location: 116466 - 116759 (+)
Gene ID: HRGMv2_3874_6_86
Type: CAZyme
Location: 116994 - 118973 (-)
Type: CAZyme
Location: 116994 - 118973 (-)
Gene ID: HRGMv2_3874_6_87
Type: pfam
Location: 119202 - 119987 (+)
Type: pfam
Location: 119202 - 119987 (+)
Gene ID: HRGMv2_3874_6_88
Type: sulfatase
Location: 120004 - 120819 (+)
Type: sulfatase
Location: 120004 - 120819 (+)
Gene ID: HRGMv2_3874_6_89
Type: CAZyme
Location: 121108 - 122304 (+)
Type: CAZyme
Location: 121108 - 122304 (+)
Gene ID: HRGMv2_3874_6_90
Type: CAZyme
Location: 122345 - 125263 (+)
Type: CAZyme
Location: 122345 - 125263 (+)
Gene ID: HRGMv2_3874_6_91
Type: pfam
Location: 125285 - 127399 (+)
Type: pfam
Location: 125285 - 127399 (+)
Gene ID: HRGMv2_3874_6_92
Type: TC
Location: 127876 - 130575 (+)
Type: TC
Location: 127876 - 130575 (+)
Gene ID: HRGMv2_3874_6_93
Type: sulfatase
Location: 130591 - 132234 (+)
Type: sulfatase
Location: 130591 - 132234 (+)
Gene ID: HRGMv2_3874_6_94
Type: CAZyme
Location: 132344 - 133489 (-)
Type: CAZyme
Location: 132344 - 133489 (-)
Gene ID: HRGMv2_3874_6_95
Type: CAZyme
Location: 133489 - 135492 (-)
Type: CAZyme
Location: 133489 - 135492 (-)
Gene ID: HRGMv2_3874_6_96
Type: CAZyme
Location: 135532 - 137538 (-)
Type: CAZyme
Location: 135532 - 137538 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.