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Cluster: HRGMv2_3874_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3874_14 HRGMv2_3874_14_18 22502 25540 + 1.B.14.6.1
TC HRGMv2_3874_14 HRGMv2_3874_14_19 25551 27164 + 8.A.46.1.1
pfam HRGMv2_3874_14 HRGMv2_3874_14_20 27174 28889 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_3874_14 HRGMv2_3874_14_21 28901 29965 + GH53
CAZyme HRGMv2_3874_14 HRGMv2_3874_14_22 29962 32406 + GH2
TC HRGMv2_3874_14 HRGMv2_3874_14_23 32527 33687 - 2.A.1.7.16
CAZyme HRGMv2_3874_14 HRGMv2_3874_14_24 33677 36058 - GH92
CAZyme HRGMv2_3874_14 HRGMv2_3874_14_25 36048 37214 - GH76
CAZyme HRGMv2_3874_14 HRGMv2_3874_14_26 37216 38511 - GH76
Gene ID: HRGMv2_3874_14_18
Type: TC
Location: 22502 - 25540 (+)
Gene ID: HRGMv2_3874_14_19
Type: TC
Location: 25551 - 27164 (+)
Gene ID: HRGMv2_3874_14_20
Type: pfam
Location: 27174 - 28889 (+)
Gene ID: HRGMv2_3874_14_21
Type: CAZyme
Location: 28901 - 29965 (+)
Gene ID: HRGMv2_3874_14_22
Type: CAZyme
Location: 29962 - 32406 (+)
Gene ID: HRGMv2_3874_14_23
Type: TC
Location: 32527 - 33687 (-)
Gene ID: HRGMv2_3874_14_24
Type: CAZyme
Location: 33677 - 36058 (-)
Gene ID: HRGMv2_3874_14_25
Type: CAZyme
Location: 36048 - 37214 (-)
Gene ID: HRGMv2_3874_14_26
Type: CAZyme
Location: 37216 - 38511 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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