Cluster: HRGMv2_3874_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: HRGMv2_3874
- CGC Family ID: CGCFAM_00540
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3874_1 | HRGMv2_3874_1_198 | 235909 | 239151 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3874_1 | HRGMv2_3874_1_199 | 239503 | 240714 | - | GH105 |
| TF | HRGMv2_3874_1 | HRGMv2_3874_1_200 | 240711 | 245117 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3874_1 | HRGMv2_3874_1_201 | 245246 | 246865 | - | CE12 | CE8 |
| CAZyme | HRGMv2_3874_1 | HRGMv2_3874_1_202 | 246951 | 248708 | - | PL1_2 |
| CAZyme | HRGMv2_3874_1 | HRGMv2_3874_1_203 | 248719 | 250413 | - | GH28 |
| pfam | HRGMv2_3874_1 | HRGMv2_3874_1_204 | 250554 | 251729 | - | DUF4861 |
| CAZyme | HRGMv2_3874_1 | HRGMv2_3874_1_205 | 251731 | 253119 | - | CE19 |
| STP | HRGMv2_3874_1 | HRGMv2_3874_1_206 | 253577 | 254767 | - | Aminotran_1_2 |
| pfam | HRGMv2_3874_1 | HRGMv2_3874_1_207 | 254764 | 255648 | - | DUF3737 |
| TC | HRGMv2_3874_1 | HRGMv2_3874_1_208 | 255858 | 257276 | - | 2.A.66.1.3 |
Gene ID: HRGMv2_3874_1_198
Type: TC
Location: 235909 - 239151 (-)
Type: TC
Location: 235909 - 239151 (-)
Gene ID: HRGMv2_3874_1_199
Type: CAZyme
Location: 239503 - 240714 (-)
Type: CAZyme
Location: 239503 - 240714 (-)
Gene ID: HRGMv2_3874_1_200
Type: TF
Location: 240711 - 245117 (-)
Type: TF
Location: 240711 - 245117 (-)
Gene ID: HRGMv2_3874_1_201
Type: CAZyme
Location: 245246 - 246865 (-)
Type: CAZyme
Location: 245246 - 246865 (-)
Gene ID: HRGMv2_3874_1_202
Type: CAZyme
Location: 246951 - 248708 (-)
Type: CAZyme
Location: 246951 - 248708 (-)
Gene ID: HRGMv2_3874_1_203
Type: CAZyme
Location: 248719 - 250413 (-)
Type: CAZyme
Location: 248719 - 250413 (-)
Gene ID: HRGMv2_3874_1_204
Type: pfam
Location: 250554 - 251729 (-)
Type: pfam
Location: 250554 - 251729 (-)
Gene ID: HRGMv2_3874_1_205
Type: CAZyme
Location: 251731 - 253119 (-)
Type: CAZyme
Location: 251731 - 253119 (-)
Gene ID: HRGMv2_3874_1_206
Type: STP
Location: 253577 - 254767 (-)
Type: STP
Location: 253577 - 254767 (-)
Gene ID: HRGMv2_3874_1_207
Type: pfam
Location: 254764 - 255648 (-)
Type: pfam
Location: 254764 - 255648 (-)
Gene ID: HRGMv2_3874_1_208
Type: TC
Location: 255858 - 257276 (-)
Type: TC
Location: 255858 - 257276 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.