Genome Details
Selected Rep_genome_ID: HRGMv2_2474
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus garvieae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2474 | 1,981,931 | 100% | 0% | UK | Europe | HRGM |
| KY201_bin.43 | 1,988,582 | 98.85% | 0.38% | NA | Africa | H3AfricaPhase2 |
| MGYG000000582 | 2,064,828 | 100% | 0.19% | Madagascar | Africa | UHGG |
| SPMP64_bin.44 | 2,067,888 | 95.57% | 1.91% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2474_CGC18 | CGCFAM_00003 | Yes | 17 | 9 | |
| HRGMv2_2474_CGC4 | CGCFAM_00102 | Yes | 8 | 2 | |
| HRGMv2_2474_CGC11 | CGCFAM_00200 | Yes | 8 | 1 | |
| HRGMv2_2474_CGC2 | CGCFAM_00503 | Yes | 3 | 2 | |
| HRGMv2_2474_CGC5 | CGCFAM_00826 | Yes | 6 | 2 | chitin |
| HRGMv2_2474_CGC23 | CGCFAM_01343 | Yes | 8 | 3 | |
| HRGMv2_2474_CGC15 | CGCFAM_01438 | Yes | 3 | 2 | |
| HRGMv2_2474_CGC7 | CGCFAM_02002 | Yes | 7 | 1 | |
| HRGMv2_2474_CGC20 | CGCFAM_02280 | Yes | 13 | 3 | |
| HRGMv2_2474_CGC16 | CGCFAM_03243 | Yes | 8 | 1 | |
| HRGMv2_2474_CGC6 | CGCFAM_03887 | Yes | 32 | 4 | |
| HRGMv2_2474_CGC25 | CGCFAM_04539 | Yes | 9 | 1 | |
| HRGMv2_2474_CGC26 | CGCFAM_05729 | Yes | 4 | 1 | |
| HRGMv2_2474_CGC22 | CGCFAM_08824 | Yes | 5 | 3 | |
| HRGMv2_2474_CGC19 | CGCFAM_08862 | Yes | 10 | 2 |
Top CAZyme Families