Cluster: HRGMv2_2474_CGC20
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2474
- CGC Family ID: CGCFAM_02280
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_6 | 5689 | 7029 | + | 3.A.18.1.1 |
| pfam | HRGMv2_2474_5 | HRGMv2_2474_5_7 | 7029 | 7613 | + | DUF218 |
| TF | HRGMv2_2474_5 | HRGMv2_2474_5_8 | 7633 | 8373 | + | HTH_6 |
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_9 | 8587 | 8913 | + | 4.A.3.2.4 |
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_10 | 8938 | 10278 | + | 4.A.3.2.2 |
| NULL(UNKNOWN) | HRGMv2_2474_5 | HRGMv2_2474_5_11 | 10351 | 10452 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2474_5 | HRGMv2_2474_5_12 | 10477 | 11979 | + | GH1 |
| CAZyme | HRGMv2_2474_5 | HRGMv2_2474_5_13 | 11979 | 13415 | + | GH1 |
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_14 | 13507 | 13827 | + | 4.A.3.2.4 |
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_15 | 13862 | 14194 | + | 4.A.3.2.4 |
| pfam | HRGMv2_2474_5 | HRGMv2_2474_5_16 | 14695 | 15921 | + | Amidase_5 | Phage_lysozyme2 |
| TC | HRGMv2_2474_5 | HRGMv2_2474_5_17 | 16059 | 17804 | + | 3.A.1.117.1 |
| CAZyme | HRGMv2_2474_5 | HRGMv2_2474_5_18 | 17848 | 19989 | - | GT51 |
Gene ID: HRGMv2_2474_5_6
Type: TC
Location: 5689 - 7029 (+)
Type: TC
Location: 5689 - 7029 (+)
Gene ID: HRGMv2_2474_5_7
Type: pfam
Location: 7029 - 7613 (+)
Type: pfam
Location: 7029 - 7613 (+)
Gene ID: HRGMv2_2474_5_8
Type: TF
Location: 7633 - 8373 (+)
Type: TF
Location: 7633 - 8373 (+)
Gene ID: HRGMv2_2474_5_9
Type: TC
Location: 8587 - 8913 (+)
Type: TC
Location: 8587 - 8913 (+)
Gene ID: HRGMv2_2474_5_10
Type: TC
Location: 8938 - 10278 (+)
Type: TC
Location: 8938 - 10278 (+)
Gene ID: HRGMv2_2474_5_11
Type:
Location: 10351 - 10452 (+)
Type:
Location: 10351 - 10452 (+)
Gene ID: HRGMv2_2474_5_12
Type: CAZyme
Location: 10477 - 11979 (+)
Type: CAZyme
Location: 10477 - 11979 (+)
Gene ID: HRGMv2_2474_5_13
Type: CAZyme
Location: 11979 - 13415 (+)
Type: CAZyme
Location: 11979 - 13415 (+)
Gene ID: HRGMv2_2474_5_14
Type: TC
Location: 13507 - 13827 (+)
Type: TC
Location: 13507 - 13827 (+)
Gene ID: HRGMv2_2474_5_15
Type: TC
Location: 13862 - 14194 (+)
Type: TC
Location: 13862 - 14194 (+)
Gene ID: HRGMv2_2474_5_16
Type: pfam
Location: 14695 - 15921 (+)
Type: pfam
Location: 14695 - 15921 (+)
Gene ID: HRGMv2_2474_5_17
Type: TC
Location: 16059 - 17804 (+)
Type: TC
Location: 16059 - 17804 (+)
Gene ID: HRGMv2_2474_5_18
Type: CAZyme
Location: 17848 - 19989 (-)
Type: CAZyme
Location: 17848 - 19989 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus garvieae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.