Cluster: HRGMv2_2474_CGC18
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_2474
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_147 | 145057 | 145944 | - | GT2 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_148 | 145946 | 147064 | - | GT4 |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_149 | 147074 | 147895 | - | LicD |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_150 | 147892 | 149031 | - | GT4 |
| TC | HRGMv2_2474_3 | HRGMv2_2474_3_151 | 149024 | 150457 | - | 2.A.66.2.23 |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_152 | 150454 | 151398 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_153 | 151382 | 151747 | - | DUF2304 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_154 | 151747 | 152478 | - | GT2 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_155 | 152481 | 153356 | - | GT2 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_156 | 153353 | 154594 | - | GT4 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_157 | 154720 | 157656 | - | GT2 |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_158 | 157676 | 159010 | - | DUF2142 |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_159 | 159020 | 159910 | - | PS_pyruv_trans |
| TC | HRGMv2_2474_3 | HRGMv2_2474_3_160 | 159907 | 161067 | - | 3.A.1.103.4 |
| pfam | HRGMv2_2474_3 | HRGMv2_2474_3_161 | 161078 | 161887 | - | ABC2_membrane |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_162 | 161888 | 162826 | - | GT2 |
| CAZyme | HRGMv2_2474_3 | HRGMv2_2474_3_163 | 162848 | 163999 | - | GT4 |
Gene ID: HRGMv2_2474_3_147
Type: CAZyme
Location: 145057 - 145944 (-)
Type: CAZyme
Location: 145057 - 145944 (-)
Gene ID: HRGMv2_2474_3_148
Type: CAZyme
Location: 145946 - 147064 (-)
Type: CAZyme
Location: 145946 - 147064 (-)
Gene ID: HRGMv2_2474_3_149
Type: pfam
Location: 147074 - 147895 (-)
Type: pfam
Location: 147074 - 147895 (-)
Gene ID: HRGMv2_2474_3_150
Type: CAZyme
Location: 147892 - 149031 (-)
Type: CAZyme
Location: 147892 - 149031 (-)
Gene ID: HRGMv2_2474_3_151
Type: TC
Location: 149024 - 150457 (-)
Type: TC
Location: 149024 - 150457 (-)
Gene ID: HRGMv2_2474_3_152
Type: pfam
Location: 150454 - 151398 (-)
Type: pfam
Location: 150454 - 151398 (-)
Gene ID: HRGMv2_2474_3_153
Type: pfam
Location: 151382 - 151747 (-)
Type: pfam
Location: 151382 - 151747 (-)
Gene ID: HRGMv2_2474_3_154
Type: CAZyme
Location: 151747 - 152478 (-)
Type: CAZyme
Location: 151747 - 152478 (-)
Gene ID: HRGMv2_2474_3_155
Type: CAZyme
Location: 152481 - 153356 (-)
Type: CAZyme
Location: 152481 - 153356 (-)
Gene ID: HRGMv2_2474_3_156
Type: CAZyme
Location: 153353 - 154594 (-)
Type: CAZyme
Location: 153353 - 154594 (-)
Gene ID: HRGMv2_2474_3_157
Type: CAZyme
Location: 154720 - 157656 (-)
Type: CAZyme
Location: 154720 - 157656 (-)
Gene ID: HRGMv2_2474_3_158
Type: pfam
Location: 157676 - 159010 (-)
Type: pfam
Location: 157676 - 159010 (-)
Gene ID: HRGMv2_2474_3_159
Type: pfam
Location: 159020 - 159910 (-)
Type: pfam
Location: 159020 - 159910 (-)
Gene ID: HRGMv2_2474_3_160
Type: TC
Location: 159907 - 161067 (-)
Type: TC
Location: 159907 - 161067 (-)
Gene ID: HRGMv2_2474_3_161
Type: pfam
Location: 161078 - 161887 (-)
Type: pfam
Location: 161078 - 161887 (-)
Gene ID: HRGMv2_2474_3_162
Type: CAZyme
Location: 161888 - 162826 (-)
Type: CAZyme
Location: 161888 - 162826 (-)
Gene ID: HRGMv2_2474_3_163
Type: CAZyme
Location: 162848 - 163999 (-)
Type: CAZyme
Location: 162848 - 163999 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus garvieae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.