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Cluster: HRGMv2_2474_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2474_2 HRGMv2_2474_2_104 112447 113880 + GH1
pfam HRGMv2_2474_2 HRGMv2_2474_2_105 113948 114415 + SmpB
pfam HRGMv2_2474_2 HRGMv2_2474_2_106 114595 115488 + PBP_like | PBP_like_2
TC HRGMv2_2474_2 HRGMv2_2474_2_107 115735 116568 + 3.A.1.7.5
TC HRGMv2_2474_2 HRGMv2_2474_2_108 116583 117506 + 3.A.1.7.5
TC HRGMv2_2474_2 HRGMv2_2474_2_109 117506 118393 + 3.A.1.7.5
TC HRGMv2_2474_2 HRGMv2_2474_2_110 118412 119215 + 3.A.1.7.5
TC HRGMv2_2474_2 HRGMv2_2474_2_111 119229 119990 + 3.A.1.7.5
Gene ID: HRGMv2_2474_2_104
Type: CAZyme
Location: 112447 - 113880 (+)
Gene ID: HRGMv2_2474_2_105
Type: pfam
Location: 113948 - 114415 (+)
Gene ID: HRGMv2_2474_2_106
Type: pfam
Location: 114595 - 115488 (+)
Gene ID: HRGMv2_2474_2_107
Type: TC
Location: 115735 - 116568 (+)
Gene ID: HRGMv2_2474_2_108
Type: TC
Location: 116583 - 117506 (+)
Gene ID: HRGMv2_2474_2_109
Type: TC
Location: 117506 - 118393 (+)
Gene ID: HRGMv2_2474_2_110
Type: TC
Location: 118412 - 119215 (+)
Gene ID: HRGMv2_2474_2_111
Type: TC
Location: 119229 - 119990 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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