Cluster: HRGMv2_2474_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2474
- CGC Family ID: CGCFAM_05729
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2474_14 | HRGMv2_2474_14_5 | 2471 | 3151 | + | 3.A.1.122.4 |
| NULL(UNKNOWN) | HRGMv2_2474_14 | HRGMv2_2474_14_6 | 3199 | 4545 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2474_14 | HRGMv2_2474_14_7 | 4859 | 5311 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2474_14 | HRGMv2_2474_14_8 | 5265 | 6992 | + | GT2 |
Gene ID: HRGMv2_2474_14_5
Type: TC
Location: 2471 - 3151 (+)
Type: TC
Location: 2471 - 3151 (+)
Gene ID: HRGMv2_2474_14_6
Type:
Location: 3199 - 4545 (-)
Type:
Location: 3199 - 4545 (-)
Gene ID: HRGMv2_2474_14_7
Type:
Location: 4859 - 5311 (+)
Type:
Location: 4859 - 5311 (+)
Gene ID: HRGMv2_2474_14_8
Type: CAZyme
Location: 5265 - 6992 (+)
Type: CAZyme
Location: 5265 - 6992 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus garvieae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.