Cluster: HRGMv2_2474_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2474
- CGC Family ID: CGCFAM_02002
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2474_1 | HRGMv2_2474_1_322 | 317824 | 318408 | - | 2.A.87.1.1 |
| TC | HRGMv2_2474_1 | HRGMv2_2474_1_323 | 318681 | 320738 | - | 2.A.36.3.2 |
| NULL(UNKNOWN) | HRGMv2_2474_1 | HRGMv2_2474_1_324 | 320747 | 321193 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2474_1 | HRGMv2_2474_1_325 | 321337 | 322134 | - | EAL |
| CAZyme | HRGMv2_2474_1 | HRGMv2_2474_1_326 | 322138 | 323472 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2474_1 | HRGMv2_2474_1_327 | 323462 | 323992 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2474_1 | HRGMv2_2474_1_328 | 324103 | 325245 | - | 9.B.34.1.1 |
Gene ID: HRGMv2_2474_1_322
Type: TC
Location: 317824 - 318408 (-)
Type: TC
Location: 317824 - 318408 (-)
Gene ID: HRGMv2_2474_1_323
Type: TC
Location: 318681 - 320738 (-)
Type: TC
Location: 318681 - 320738 (-)
Gene ID: HRGMv2_2474_1_324
Type:
Location: 320747 - 321193 (-)
Type:
Location: 320747 - 321193 (-)
Gene ID: HRGMv2_2474_1_325
Type: STP
Location: 321337 - 322134 (-)
Type: STP
Location: 321337 - 322134 (-)
Gene ID: HRGMv2_2474_1_326
Type: CAZyme
Location: 322138 - 323472 (-)
Type: CAZyme
Location: 322138 - 323472 (-)
Gene ID: HRGMv2_2474_1_327
Type:
Location: 323462 - 323992 (-)
Type:
Location: 323462 - 323992 (-)
Gene ID: HRGMv2_2474_1_328
Type: TC
Location: 324103 - 325245 (-)
Type: TC
Location: 324103 - 325245 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus garvieae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.