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Cluster: HRGMv2_2474_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2474_4 HRGMv2_2474_4_242 222254 222991 + 1.A.8.2.6
TC HRGMv2_2474_4 HRGMv2_2474_4_243 223186 224679 + 4.A.2.1.6
TC HRGMv2_2474_4 HRGMv2_2474_4_244 224694 225146 + 4.A.2.1.8
pfam HRGMv2_2474_4 HRGMv2_2474_4_245 225204 225428 + Glyco_hydro_38N
CAZyme HRGMv2_2474_4 HRGMv2_2474_4_246 225549 227822 + GH38
TF HRGMv2_2474_4 HRGMv2_2474_4_247 227832 228629 + HTH_6
CAZyme HRGMv2_2474_4 HRGMv2_2474_4_248 228642 230021 + GH1
pfam HRGMv2_2474_4 HRGMv2_2474_4_249 230011 230895 + ROK
pfam HRGMv2_2474_4 HRGMv2_2474_4_250 230957 231298 + DUF2200
TC HRGMv2_2474_4 HRGMv2_2474_4_251 231681 234356 + 3.A.3.2.21
Gene ID: HRGMv2_2474_4_242
Type: TC
Location: 222254 - 222991 (+)
Gene ID: HRGMv2_2474_4_243
Type: TC
Location: 223186 - 224679 (+)
Gene ID: HRGMv2_2474_4_244
Type: TC
Location: 224694 - 225146 (+)
Gene ID: HRGMv2_2474_4_245
Type: pfam
Location: 225204 - 225428 (+)
Gene ID: HRGMv2_2474_4_246
Type: CAZyme
Location: 225549 - 227822 (+)
Gene ID: HRGMv2_2474_4_247
Type: TF
Location: 227832 - 228629 (+)
Gene ID: HRGMv2_2474_4_248
Type: CAZyme
Location: 228642 - 230021 (+)
Gene ID: HRGMv2_2474_4_249
Type: pfam
Location: 230011 - 230895 (+)
Gene ID: HRGMv2_2474_4_250
Type: pfam
Location: 230957 - 231298 (+)
Gene ID: HRGMv2_2474_4_251
Type: TC
Location: 231681 - 234356 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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