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Cluster: HRGMv2_2474_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2474_1 HRGMv2_2474_1_280 276365 277723 + 2.A.1.3.30
NULL(UNKNOWN) HRGMv2_2474_1 HRGMv2_2474_1_281 277852 278478 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2474_1 HRGMv2_2474_1_282 278546 278869 - 2.A.53.3.4
STP HRGMv2_2474_1 HRGMv2_2474_1_283 278869 279165 - Rhodanese
pfam HRGMv2_2474_1 HRGMv2_2474_1_284 279272 280144 - ROK
CAZyme HRGMv2_2474_1 HRGMv2_2474_1_285 280135 281577 - GH1
CAZyme HRGMv2_2474_1 HRGMv2_2474_1_286 281700 282761 - GH18
NULL(UNKNOWN) HRGMv2_2474_1 HRGMv2_2474_1_287 282774 282872 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2474_1 HRGMv2_2474_1_288 282908 284227 - GH125
pfam HRGMv2_2474_1 HRGMv2_2474_1_289 284202 285665 - Glyco_hydro_38C
CAZyme HRGMv2_2474_1 HRGMv2_2474_1_290 285690 286829 - GH38
TC HRGMv2_2474_1 HRGMv2_2474_1_291 286860 288200 - 4.A.3.2.8
TF HRGMv2_2474_1 HRGMv2_2474_1_292 288378 289091 + GntR
TF HRGMv2_2474_1 HRGMv2_2474_1_293 289239 289934 + Fe_dep_repress
TC HRGMv2_2474_1 HRGMv2_2474_1_294 290006 291562 + 2.A.55.2.6
pfam HRGMv2_2474_1 HRGMv2_2474_1_295 291597 292295 - AIM24
NULL(UNKNOWN) HRGMv2_2474_1 HRGMv2_2474_1_296 292391 292906 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2474_1 HRGMv2_2474_1_297 293038 294987 - 2.A.36.3.2
pfam HRGMv2_2474_1 HRGMv2_2474_1_298 295102 295833 - Ubie_methyltran | TehB | MTS | PrmA | Methyltransf_9 | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2474_1 HRGMv2_2474_1_299 295962 297179 - 2.A.1.2.5
pfam HRGMv2_2474_1 HRGMv2_2474_1_300 297291 297707 - NDK
TC HRGMv2_2474_1 HRGMv2_2474_1_301 297847 300450 - 3.A.9.1.2
pfam HRGMv2_2474_1 HRGMv2_2474_1_302 300609 301238 - NAD_binding_10
TF HRGMv2_2474_1 HRGMv2_2474_1_303 301327 301767 - Rrf2
TC HRGMv2_2474_1 HRGMv2_2474_1_304 301914 302444 + 9.B.36.1.3
TC HRGMv2_2474_1 HRGMv2_2474_1_305 302493 303659 - 2.A.1.2.8
pfam HRGMv2_2474_1 HRGMv2_2474_1_306 303864 306125 - GARS_A | Glu_cys_ligase | ATP-grasp_6
pfam HRGMv2_2474_1 HRGMv2_2474_1_307 306236 306682 - OsmC
TC HRGMv2_2474_1 HRGMv2_2474_1_308 306822 307670 + 3.A.1.3.13
pfam HRGMv2_2474_1 HRGMv2_2474_1_309 307657 309147 + Amidase
pfam HRGMv2_2474_1 HRGMv2_2474_1_310 309173 309592 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC HRGMv2_2474_1 HRGMv2_2474_1_311 309698 310273 - 1.A.78.2.6
Gene ID: HRGMv2_2474_1_280
Type: TC
Location: 276365 - 277723 (+)
Gene ID: HRGMv2_2474_1_281
Type:
Location: 277852 - 278478 (-)
Gene ID: HRGMv2_2474_1_282
Type: TC
Location: 278546 - 278869 (-)
Gene ID: HRGMv2_2474_1_283
Type: STP
Location: 278869 - 279165 (-)
Gene ID: HRGMv2_2474_1_284
Type: pfam
Location: 279272 - 280144 (-)
Gene ID: HRGMv2_2474_1_285
Type: CAZyme
Location: 280135 - 281577 (-)
Gene ID: HRGMv2_2474_1_286
Type: CAZyme
Location: 281700 - 282761 (-)
Gene ID: HRGMv2_2474_1_287
Type:
Location: 282774 - 282872 (-)
Gene ID: HRGMv2_2474_1_288
Type: CAZyme
Location: 282908 - 284227 (-)
Gene ID: HRGMv2_2474_1_289
Type: pfam
Location: 284202 - 285665 (-)
Gene ID: HRGMv2_2474_1_290
Type: CAZyme
Location: 285690 - 286829 (-)
Gene ID: HRGMv2_2474_1_291
Type: TC
Location: 286860 - 288200 (-)
Gene ID: HRGMv2_2474_1_292
Type: TF
Location: 288378 - 289091 (+)
Gene ID: HRGMv2_2474_1_293
Type: TF
Location: 289239 - 289934 (+)
Gene ID: HRGMv2_2474_1_294
Type: TC
Location: 290006 - 291562 (+)
Gene ID: HRGMv2_2474_1_295
Type: pfam
Location: 291597 - 292295 (-)
Gene ID: HRGMv2_2474_1_296
Type:
Location: 292391 - 292906 (-)
Gene ID: HRGMv2_2474_1_297
Type: TC
Location: 293038 - 294987 (-)
Gene ID: HRGMv2_2474_1_298
Type: pfam
Location: 295102 - 295833 (-)
Gene ID: HRGMv2_2474_1_299
Type: TC
Location: 295962 - 297179 (-)
Gene ID: HRGMv2_2474_1_300
Type: pfam
Location: 297291 - 297707 (-)
Gene ID: HRGMv2_2474_1_301
Type: TC
Location: 297847 - 300450 (-)
Gene ID: HRGMv2_2474_1_302
Type: pfam
Location: 300609 - 301238 (-)
Gene ID: HRGMv2_2474_1_303
Type: TF
Location: 301327 - 301767 (-)
Gene ID: HRGMv2_2474_1_304
Type: TC
Location: 301914 - 302444 (+)
Gene ID: HRGMv2_2474_1_305
Type: TC
Location: 302493 - 303659 (-)
Gene ID: HRGMv2_2474_1_306
Type: pfam
Location: 303864 - 306125 (-)
Gene ID: HRGMv2_2474_1_307
Type: pfam
Location: 306236 - 306682 (-)
Gene ID: HRGMv2_2474_1_308
Type: TC
Location: 306822 - 307670 (+)
Gene ID: HRGMv2_2474_1_309
Type: pfam
Location: 307657 - 309147 (+)
Gene ID: HRGMv2_2474_1_310
Type: pfam
Location: 309173 - 309592 (-)
Gene ID: HRGMv2_2474_1_311
Type: TC
Location: 309698 - 310273 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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