Genome Details
Selected Rep_genome_ID: HRGMv2_1821
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea agglomerans
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_1821 | 5,037,799 | 100% | 0.273% | UK | Europe | HRGM |
| Rep_999 | 4,723,531 | 94.9617% | 0.437158% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1821_CGC13 | CGCFAM_00003 | Yes | 12 | 3 | |
| HRGMv2_1821_CGC14 | CGCFAM_00020 | Yes | 4 | 1 | host glycan/beta-glucan |
| HRGMv2_1821_CGC48 | CGCFAM_00144 | Yes | 5 | 2 | |
| HRGMv2_1821_CGC23 | CGCFAM_00447 | Yes | 10 | 1 | |
| HRGMv2_1821_CGC34 | CGCFAM_00827 | Yes | 11 | 2 | galactan |
| HRGMv2_1821_CGC43 | CGCFAM_02023 | Yes | 3 | 1 | |
| HRGMv2_1821_CGC10 | CGCFAM_02170 | Yes | 6 | 1 | |
| HRGMv2_1821_CGC46 | CGCFAM_02218 | Yes | 14 | 1 | |
| HRGMv2_1821_CGC1 | CGCFAM_02885 | Yes | 19 | 3 | |
| HRGMv2_1821_CGC6 | CGCFAM_03874 | Yes | 6 | 1 | |
| HRGMv2_1821_CGC29 | CGCFAM_04025 | Yes | 6 | 1 | |
| HRGMv2_1821_CGC17 | CGCFAM_04026 | Yes | 6 | 1 | |
| HRGMv2_1821_CGC7 | CGCFAM_05270 | Yes | 3 | 1 | |
| HRGMv2_1821_CGC40 | CGCFAM_06066 | Yes | 6 | 1 | |
| HRGMv2_1821_CGC19 | CGCFAM_06068 | Yes | 12 | 1 | |
| HRGMv2_1821_CGC9 | CGCFAM_06069 | Yes | 10 | 1 | |
| HRGMv2_1821_CGC36 | CGCFAM_09874 | Yes | 11 | 1 | |
| HRGMv2_1821_CGC11 | CGCFAM_09879 | Yes | 11 | 1 | |
| HRGMv2_1821_CGC31 | CGCFAM_09880 | Yes | 5 | 1 | |
| HRGMv2_1821_CGC44 | CGCFAM_09881 | Yes | 11 | 1 | |
| HRGMv2_1821_CGC47 | CGCFAM_09882 | Yes | 5 | 1 |
Top CAZyme Families