Cluster: HRGMv2_1821_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1821
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1821_5 | HRGMv2_1821_5_23 | 29528 | 30322 | + | 3.A.1.103.6 |
| TC | HRGMv2_1821_5 | HRGMv2_1821_5_24 | 30322 | 31521 | + | 3.A.1.103.5 |
| NULL(UNKNOWN) | HRGMv2_1821_5 | HRGMv2_1821_5_25 | 31529 | 32401 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1821_5 | HRGMv2_1821_5_26 | 32412 | 32828 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1821_5 | HRGMv2_1821_5_27 | 32831 | 36082 | + | GT2 | GT4 | GT4 |
| pfam | HRGMv2_1821_5 | HRGMv2_1821_5_28 | 36094 | 37128 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | HRGMv2_1821_5 | HRGMv2_1821_5_29 | 37130 | 38032 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1821_5 | HRGMv2_1821_5_30 | 38008 | 39171 | + | GT4 |
| CAZyme | HRGMv2_1821_5 | HRGMv2_1821_5_31 | 39168 | 40283 | + | GT4 |
| pfam | HRGMv2_1821_5 | HRGMv2_1821_5_32 | 40419 | 41828 | + | 6PGD | NAD_binding_2 |
| pfam | HRGMv2_1821_5 | HRGMv2_1821_5_33 | 41864 | 43162 | - | AstE_AspA_cat |
| TC | HRGMv2_1821_5 | HRGMv2_1821_5_34 | 43269 | 44060 | - | 3.A.1.3.29 |
Gene ID: HRGMv2_1821_5_23
Type: TC
Location: 29528 - 30322 (+)
Type: TC
Location: 29528 - 30322 (+)
Gene ID: HRGMv2_1821_5_24
Type: TC
Location: 30322 - 31521 (+)
Type: TC
Location: 30322 - 31521 (+)
Gene ID: HRGMv2_1821_5_25
Type:
Location: 31529 - 32401 (+)
Type:
Location: 31529 - 32401 (+)
Gene ID: HRGMv2_1821_5_26
Type:
Location: 32412 - 32828 (+)
Type:
Location: 32412 - 32828 (+)
Gene ID: HRGMv2_1821_5_27
Type: CAZyme
Location: 32831 - 36082 (+)
Type: CAZyme
Location: 32831 - 36082 (+)
Gene ID: HRGMv2_1821_5_28
Type: pfam
Location: 36094 - 37128 (+)
Type: pfam
Location: 36094 - 37128 (+)
Gene ID: HRGMv2_1821_5_29
Type: pfam
Location: 37130 - 38032 (+)
Type: pfam
Location: 37130 - 38032 (+)
Gene ID: HRGMv2_1821_5_30
Type: CAZyme
Location: 38008 - 39171 (+)
Type: CAZyme
Location: 38008 - 39171 (+)
Gene ID: HRGMv2_1821_5_31
Type: CAZyme
Location: 39168 - 40283 (+)
Type: CAZyme
Location: 39168 - 40283 (+)
Gene ID: HRGMv2_1821_5_32
Type: pfam
Location: 40419 - 41828 (+)
Type: pfam
Location: 40419 - 41828 (+)
Gene ID: HRGMv2_1821_5_33
Type: pfam
Location: 41864 - 43162 (-)
Type: pfam
Location: 41864 - 43162 (-)
Gene ID: HRGMv2_1821_5_34
Type: TC
Location: 43269 - 44060 (-)
Type: TC
Location: 43269 - 44060 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea agglomerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.