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Genome Details

Selected Rep_genome_ID: HRGMv2_0203
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola sp900544075
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0203 3,113,536 91.52% 0% Japan Asia HRGM
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0203_CGC12 CGCFAM_00001 Yes 6 4 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0203_CGC14 CGCFAM_00001 Yes 6 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0203_CGC31 CGCFAM_00025 Yes 7 4 pectin/alpha-glucan
HRGMv2_0203_CGC26 CGCFAM_00043 Yes 5 2 alpha-glucan
HRGMv2_0203_CGC10 CGCFAM_00101 Yes 20 14 beta-glucan
HRGMv2_0203_CGC33 CGCFAM_00108 Yes 7 3 pectin
HRGMv2_0203_CGC1 CGCFAM_00110 Yes 16 7 pectin/host glycan
HRGMv2_0203_CGC15 CGCFAM_00110 Yes 12 4 pectin/host glycan
HRGMv2_0203_CGC25 CGCFAM_00219 Yes 7 4 host glycan
HRGMv2_0203_CGC30 CGCFAM_00304 Yes 11 3
HRGMv2_0203_CGC16 CGCFAM_00333 Yes 13 4 beta-mannan
HRGMv2_0203_CGC35 CGCFAM_00406 Yes 6 1
HRGMv2_0203_CGC5 CGCFAM_00461 Yes 4 2
HRGMv2_0203_CGC23 CGCFAM_00478 Yes 4 1
HRGMv2_0203_CGC29 CGCFAM_00496 Yes 4 1
HRGMv2_0203_CGC4 CGCFAM_01209 Yes 3 1
HRGMv2_0203_CGC19 CGCFAM_01657 Yes 4 1
HRGMv2_0203_CGC6 CGCFAM_01788 Yes 5 1
HRGMv2_0203_CGC11 CGCFAM_02717 Yes 10 5
HRGMv2_0203_CGC2 CGCFAM_04748 Yes 19 3
HRGMv2_0203_CGC24 CGCFAM_04751 Yes 5 3
HRGMv2_0203_CGC34 CGCFAM_07244 Yes 6 1
HRGMv2_0203_CGC9 CGCFAM_09266 Yes 8 2
HRGMv2_0203_CGC18 CGCFAM_09538 Yes 3 1
Top CAZyme Families