Cluster: HRGMv2_0203_CGC2
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0203
- CGC Family ID: CGCFAM_04748
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_78 | 106949 | 110194 | - | 1.B.14.6.1 |
| STP | HRGMv2_0203_1 | HRGMv2_0203_1_79 | 110210 | 110737 | - | Sigma70_r2 | Sigma70_r4_2 |
| TF | HRGMv2_0203_1 | HRGMv2_0203_1_80 | 110904 | 114956 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_81 | 114970 | 117681 | - | PL40 |
| NULL(UNKNOWN) | HRGMv2_0203_1 | HRGMv2_0203_1_82 | 117874 | 118407 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0203_1 | HRGMv2_0203_1_83 | 118596 | 122474 | + | HTH_AraC |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_84 | 122610 | 125570 | + | 1.B.14.6.1 |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_85 | 125589 | 127166 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_86 | 127179 | 128648 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_87 | 128662 | 129741 | + | GH53 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_88 | 129821 | 133339 | + | GH2 | GH53 |
| TF | HRGMv2_0203_1 | HRGMv2_0203_1_89 | 133404 | 134315 | - | HTH_AraC |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_90 | 134491 | 135564 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_91 | 135561 | 138701 | + | 2.A.6.2.38 |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_92 | 138771 | 140075 | + | OEP | OEP |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_93 | 140262 | 141323 | - | DUF3810 |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_94 | 141457 | 142689 | + | 9.B.156.3.1 |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_95 | 142805 | 143227 | + | YbeY |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_96 | 143348 | 145219 | + | 1.C.39.4.5 |
Gene ID: HRGMv2_0203_1_78
Type: TC
Location: 106949 - 110194 (-)
Type: TC
Location: 106949 - 110194 (-)
Gene ID: HRGMv2_0203_1_79
Type: STP
Location: 110210 - 110737 (-)
Type: STP
Location: 110210 - 110737 (-)
Gene ID: HRGMv2_0203_1_80
Type: TF
Location: 110904 - 114956 (-)
Type: TF
Location: 110904 - 114956 (-)
Gene ID: HRGMv2_0203_1_81
Type: CAZyme
Location: 114970 - 117681 (-)
Type: CAZyme
Location: 114970 - 117681 (-)
Gene ID: HRGMv2_0203_1_82
Type:
Location: 117874 - 118407 (-)
Type:
Location: 117874 - 118407 (-)
Gene ID: HRGMv2_0203_1_83
Type: TF
Location: 118596 - 122474 (+)
Type: TF
Location: 118596 - 122474 (+)
Gene ID: HRGMv2_0203_1_84
Type: TC
Location: 122610 - 125570 (+)
Type: TC
Location: 122610 - 125570 (+)
Gene ID: HRGMv2_0203_1_85
Type: TC
Location: 125589 - 127166 (+)
Type: TC
Location: 125589 - 127166 (+)
Gene ID: HRGMv2_0203_1_86
Type: pfam
Location: 127179 - 128648 (+)
Type: pfam
Location: 127179 - 128648 (+)
Gene ID: HRGMv2_0203_1_87
Type: CAZyme
Location: 128662 - 129741 (+)
Type: CAZyme
Location: 128662 - 129741 (+)
Gene ID: HRGMv2_0203_1_88
Type: CAZyme
Location: 129821 - 133339 (+)
Type: CAZyme
Location: 129821 - 133339 (+)
Gene ID: HRGMv2_0203_1_89
Type: TF
Location: 133404 - 134315 (-)
Type: TF
Location: 133404 - 134315 (-)
Gene ID: HRGMv2_0203_1_90
Type: pfam
Location: 134491 - 135564 (+)
Type: pfam
Location: 134491 - 135564 (+)
Gene ID: HRGMv2_0203_1_91
Type: TC
Location: 135561 - 138701 (+)
Type: TC
Location: 135561 - 138701 (+)
Gene ID: HRGMv2_0203_1_92
Type: pfam
Location: 138771 - 140075 (+)
Type: pfam
Location: 138771 - 140075 (+)
Gene ID: HRGMv2_0203_1_93
Type: pfam
Location: 140262 - 141323 (-)
Type: pfam
Location: 140262 - 141323 (-)
Gene ID: HRGMv2_0203_1_94
Type: TC
Location: 141457 - 142689 (+)
Type: TC
Location: 141457 - 142689 (+)
Gene ID: HRGMv2_0203_1_95
Type: pfam
Location: 142805 - 143227 (+)
Type: pfam
Location: 142805 - 143227 (+)
Gene ID: HRGMv2_0203_1_96
Type: TC
Location: 143348 - 145219 (+)
Type: TC
Location: 143348 - 145219 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.