Cluster: HRGMv2_0203_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: pectin/host glycan
- Genome ID: HRGMv2_0203
- CGC Family ID: CGCFAM_00110
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_23 | 22616 | 25078 | - | 3.A.11.3.1 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_24 | 25141 | 28740 | - | GH2 |
| sulfatase | HRGMv2_0203_1 | HRGMv2_0203_1_25 | 28777 | 30351 | - | S1_11 |
| sulfatase | HRGMv2_0203_1 | HRGMv2_0203_1_26 | 30405 | 31052 | - | S1_16 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_27 | 31076 | 33355 | - | GH20 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_28 | 33389 | 35212 | - | GH29 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_29 | 35478 | 37394 | - | GH16_3 |
| pfam | HRGMv2_0203_1 | HRGMv2_0203_1_30 | 37495 | 39339 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0203_1 | HRGMv2_0203_1_31 | 39352 | 42633 | - | 1.B.14.6.1 |
| TF | HRGMv2_0203_1 | HRGMv2_0203_1_32 | 42866 | 46825 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0203_1 | HRGMv2_0203_1_33 | 47253 | 49280 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_34 | 49378 | 50688 | + | GH29 |
| NULL(UNKNOWN) | HRGMv2_0203_1 | HRGMv2_0203_1_35 | 50713 | 50877 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0203_1 | HRGMv2_0203_1_36 | 50906 | 52990 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_37 | 53152 | 55158 | + | GH20 |
| CAZyme | HRGMv2_0203_1 | HRGMv2_0203_1_38 | 55354 | 56142 | + | GH16_3 |
Gene ID: HRGMv2_0203_1_23
Type: TC
Location: 22616 - 25078 (-)
Type: TC
Location: 22616 - 25078 (-)
Gene ID: HRGMv2_0203_1_24
Type: CAZyme
Location: 25141 - 28740 (-)
Type: CAZyme
Location: 25141 - 28740 (-)
Gene ID: HRGMv2_0203_1_25
Type: sulfatase
Location: 28777 - 30351 (-)
Type: sulfatase
Location: 28777 - 30351 (-)
Gene ID: HRGMv2_0203_1_26
Type: sulfatase
Location: 30405 - 31052 (-)
Type: sulfatase
Location: 30405 - 31052 (-)
Gene ID: HRGMv2_0203_1_27
Type: CAZyme
Location: 31076 - 33355 (-)
Type: CAZyme
Location: 31076 - 33355 (-)
Gene ID: HRGMv2_0203_1_28
Type: CAZyme
Location: 33389 - 35212 (-)
Type: CAZyme
Location: 33389 - 35212 (-)
Gene ID: HRGMv2_0203_1_29
Type: CAZyme
Location: 35478 - 37394 (-)
Type: CAZyme
Location: 35478 - 37394 (-)
Gene ID: HRGMv2_0203_1_30
Type: pfam
Location: 37495 - 39339 (-)
Type: pfam
Location: 37495 - 39339 (-)
Gene ID: HRGMv2_0203_1_31
Type: TC
Location: 39352 - 42633 (-)
Type: TC
Location: 39352 - 42633 (-)
Gene ID: HRGMv2_0203_1_32
Type: TF
Location: 42866 - 46825 (+)
Type: TF
Location: 42866 - 46825 (+)
Gene ID: HRGMv2_0203_1_33
Type:
Location: 47253 - 49280 (+)
Type:
Location: 47253 - 49280 (+)
Gene ID: HRGMv2_0203_1_34
Type: CAZyme
Location: 49378 - 50688 (+)
Type: CAZyme
Location: 49378 - 50688 (+)
Gene ID: HRGMv2_0203_1_35
Type:
Location: 50713 - 50877 (+)
Type:
Location: 50713 - 50877 (+)
Gene ID: HRGMv2_0203_1_36
Type:
Location: 50906 - 52990 (+)
Type:
Location: 50906 - 52990 (+)
Gene ID: HRGMv2_0203_1_37
Type: CAZyme
Location: 53152 - 55158 (+)
Type: CAZyme
Location: 53152 - 55158 (+)
Gene ID: HRGMv2_0203_1_38
Type: CAZyme
Location: 55354 - 56142 (+)
Type: CAZyme
Location: 55354 - 56142 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.