Cluster: HRGMv2_0203_CGC10
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 14
- Substrate: beta-glucan
- Genome ID: HRGMv2_0203
- CGC Family ID: CGCFAM_00101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_8 | 11056 | 13035 | - | GH51_2 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_9 | 13126 | 15477 | - | GH3 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_10 | 15483 | 18497 | - | GH95 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_11 | 18632 | 20047 | - | CE20 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_12 | 20168 | 23890 | - | GH2 | GH2 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_13 | 23907 | 26360 | - | GH2 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_14 | 26367 | 29264 | - | CBM91 | GH43_12 | GH43_16 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_15 | 29390 | 30925 | - | GH5_4 |
| pfam | HRGMv2_0203_6 | HRGMv2_0203_6_16 | 30947 | 32437 | - | SGBP_B_XBD |
| pfam | HRGMv2_0203_6 | HRGMv2_0203_6_17 | 32449 | 34104 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0203_6 | HRGMv2_0203_6_18 | 34124 | 37057 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0203_6 | HRGMv2_0203_6_19 | 37023 | 37310 | - | CarbopepD_reg_2 |
| NULL(UNKNOWN) | HRGMv2_0203_6 | HRGMv2_0203_6_20 | 38049 | 38282 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_21 | 38620 | 39825 | + | GH5_4 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_22 | 39875 | 41401 | + | GH29 |
| TF | HRGMv2_0203_6 | HRGMv2_0203_6_23 | 41557 | 45540 | + | HTH_AraC |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_24 | 45685 | 48564 | + | GH31_4 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_25 | 48568 | 51069 | + | GH2 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_26 | 51084 | 53300 | + | GH3 |
| CAZyme | HRGMv2_0203_6 | HRGMv2_0203_6_27 | 53331 | 55271 | + | GH97 |
Gene ID: HRGMv2_0203_6_8
Type: CAZyme
Location: 11056 - 13035 (-)
Type: CAZyme
Location: 11056 - 13035 (-)
Gene ID: HRGMv2_0203_6_9
Type: CAZyme
Location: 13126 - 15477 (-)
Type: CAZyme
Location: 13126 - 15477 (-)
Gene ID: HRGMv2_0203_6_10
Type: CAZyme
Location: 15483 - 18497 (-)
Type: CAZyme
Location: 15483 - 18497 (-)
Gene ID: HRGMv2_0203_6_11
Type: CAZyme
Location: 18632 - 20047 (-)
Type: CAZyme
Location: 18632 - 20047 (-)
Gene ID: HRGMv2_0203_6_12
Type: CAZyme
Location: 20168 - 23890 (-)
Type: CAZyme
Location: 20168 - 23890 (-)
Gene ID: HRGMv2_0203_6_13
Type: CAZyme
Location: 23907 - 26360 (-)
Type: CAZyme
Location: 23907 - 26360 (-)
Gene ID: HRGMv2_0203_6_14
Type: CAZyme
Location: 26367 - 29264 (-)
Type: CAZyme
Location: 26367 - 29264 (-)
Gene ID: HRGMv2_0203_6_15
Type: CAZyme
Location: 29390 - 30925 (-)
Type: CAZyme
Location: 29390 - 30925 (-)
Gene ID: HRGMv2_0203_6_16
Type: pfam
Location: 30947 - 32437 (-)
Type: pfam
Location: 30947 - 32437 (-)
Gene ID: HRGMv2_0203_6_17
Type: pfam
Location: 32449 - 34104 (-)
Type: pfam
Location: 32449 - 34104 (-)
Gene ID: HRGMv2_0203_6_18
Type: TC
Location: 34124 - 37057 (-)
Type: TC
Location: 34124 - 37057 (-)
Gene ID: HRGMv2_0203_6_19
Type: pfam
Location: 37023 - 37310 (-)
Type: pfam
Location: 37023 - 37310 (-)
Gene ID: HRGMv2_0203_6_20
Type:
Location: 38049 - 38282 (+)
Type:
Location: 38049 - 38282 (+)
Gene ID: HRGMv2_0203_6_21
Type: CAZyme
Location: 38620 - 39825 (+)
Type: CAZyme
Location: 38620 - 39825 (+)
Gene ID: HRGMv2_0203_6_22
Type: CAZyme
Location: 39875 - 41401 (+)
Type: CAZyme
Location: 39875 - 41401 (+)
Gene ID: HRGMv2_0203_6_23
Type: TF
Location: 41557 - 45540 (+)
Type: TF
Location: 41557 - 45540 (+)
Gene ID: HRGMv2_0203_6_24
Type: CAZyme
Location: 45685 - 48564 (+)
Type: CAZyme
Location: 45685 - 48564 (+)
Gene ID: HRGMv2_0203_6_25
Type: CAZyme
Location: 48568 - 51069 (+)
Type: CAZyme
Location: 48568 - 51069 (+)
Gene ID: HRGMv2_0203_6_26
Type: CAZyme
Location: 51084 - 53300 (+)
Type: CAZyme
Location: 51084 - 53300 (+)
Gene ID: HRGMv2_0203_6_27
Type: CAZyme
Location: 53331 - 55271 (+)
Type: CAZyme
Location: 53331 - 55271 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.