Cluster: HRGMv2_0203_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate: beta-mannan
- Genome ID: HRGMv2_0203
- CGC Family ID: CGCFAM_00333
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0203_10 | HRGMv2_0203_10_6 | 5981 | 8191 | - | GH36 |
| TF | HRGMv2_0203_10 | HRGMv2_0203_10_7 | 8333 | 9223 | + | HTH_AraC |
| CAZyme | HRGMv2_0203_10 | HRGMv2_0203_10_8 | 9410 | 10504 | + | GH26 |
| CAZyme | HRGMv2_0203_10 | HRGMv2_0203_10_9 | 10522 | 11697 | + | GH130_1 |
| TC | HRGMv2_0203_10 | HRGMv2_0203_10_10 | 11722 | 13110 | + | 2.A.2.3.6 |
| pfam | HRGMv2_0203_10 | HRGMv2_0203_10_11 | 13107 | 14300 | + | GlcNAc_2-epim |
| TC | HRGMv2_0203_10 | HRGMv2_0203_10_12 | 14447 | 17695 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0203_10 | HRGMv2_0203_10_13 | 17717 | 19504 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0203_10 | HRGMv2_0203_10_14 | 19525 | 20700 | + | SGBP_B_XBD |
| CAZyme | HRGMv2_0203_10 | HRGMv2_0203_10_15 | 20743 | 22455 | + | GH26 | GH26 |
| pfam | HRGMv2_0203_10 | HRGMv2_0203_10_16 | 22487 | 24043 | + | Mfa_like_1 |
| pfam | HRGMv2_0203_10 | HRGMv2_0203_10_17 | 24352 | 25350 | + | Metallophos |
| TC | HRGMv2_0203_10 | HRGMv2_0203_10_18 | 25421 | 27559 | - | 2.A.36.7.6 |
Gene ID: HRGMv2_0203_10_6
Type: CAZyme
Location: 5981 - 8191 (-)
Type: CAZyme
Location: 5981 - 8191 (-)
Gene ID: HRGMv2_0203_10_7
Type: TF
Location: 8333 - 9223 (+)
Type: TF
Location: 8333 - 9223 (+)
Gene ID: HRGMv2_0203_10_8
Type: CAZyme
Location: 9410 - 10504 (+)
Type: CAZyme
Location: 9410 - 10504 (+)
Gene ID: HRGMv2_0203_10_9
Type: CAZyme
Location: 10522 - 11697 (+)
Type: CAZyme
Location: 10522 - 11697 (+)
Gene ID: HRGMv2_0203_10_10
Type: TC
Location: 11722 - 13110 (+)
Type: TC
Location: 11722 - 13110 (+)
Gene ID: HRGMv2_0203_10_11
Type: pfam
Location: 13107 - 14300 (+)
Type: pfam
Location: 13107 - 14300 (+)
Gene ID: HRGMv2_0203_10_12
Type: TC
Location: 14447 - 17695 (+)
Type: TC
Location: 14447 - 17695 (+)
Gene ID: HRGMv2_0203_10_13
Type: pfam
Location: 17717 - 19504 (+)
Type: pfam
Location: 17717 - 19504 (+)
Gene ID: HRGMv2_0203_10_14
Type: pfam
Location: 19525 - 20700 (+)
Type: pfam
Location: 19525 - 20700 (+)
Gene ID: HRGMv2_0203_10_15
Type: CAZyme
Location: 20743 - 22455 (+)
Type: CAZyme
Location: 20743 - 22455 (+)
Gene ID: HRGMv2_0203_10_16
Type: pfam
Location: 22487 - 24043 (+)
Type: pfam
Location: 22487 - 24043 (+)
Gene ID: HRGMv2_0203_10_17
Type: pfam
Location: 24352 - 25350 (+)
Type: pfam
Location: 24352 - 25350 (+)
Gene ID: HRGMv2_0203_10_18
Type: TC
Location: 25421 - 27559 (-)
Type: TC
Location: 25421 - 27559 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.