Cluster: HRGMv2_0203_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: HRGMv2_0203
- CGC Family ID: CGCFAM_00219
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0203_24 | HRGMv2_0203_24_9 | 12619 | 14625 | - | PL12_2 |
| CAZyme | HRGMv2_0203_24 | HRGMv2_0203_24_10 | 14628 | 15908 | - | GH88 |
| TC | HRGMv2_0203_24 | HRGMv2_0203_24_11 | 16118 | 17830 | - | 8.A.46.1.3 |
| TC | HRGMv2_0203_24 | HRGMv2_0203_24_12 | 17926 | 21069 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0203_24 | HRGMv2_0203_24_13 | 21130 | 23487 | - | SGBP_BT4661-like |
| CAZyme | HRGMv2_0203_24 | HRGMv2_0203_24_14 | 23511 | 25778 | - | PL12_2 |
| CAZyme | HRGMv2_0203_24 | HRGMv2_0203_24_15 | 26018 | 28129 | - | PL12_2 |
Gene ID: HRGMv2_0203_24_9
Type: CAZyme
Location: 12619 - 14625 (-)
Type: CAZyme
Location: 12619 - 14625 (-)
Gene ID: HRGMv2_0203_24_10
Type: CAZyme
Location: 14628 - 15908 (-)
Type: CAZyme
Location: 14628 - 15908 (-)
Gene ID: HRGMv2_0203_24_11
Type: TC
Location: 16118 - 17830 (-)
Type: TC
Location: 16118 - 17830 (-)
Gene ID: HRGMv2_0203_24_12
Type: TC
Location: 17926 - 21069 (-)
Type: TC
Location: 17926 - 21069 (-)
Gene ID: HRGMv2_0203_24_13
Type: pfam
Location: 21130 - 23487 (-)
Type: pfam
Location: 21130 - 23487 (-)
Gene ID: HRGMv2_0203_24_14
Type: CAZyme
Location: 23511 - 25778 (-)
Type: CAZyme
Location: 23511 - 25778 (-)
Gene ID: HRGMv2_0203_24_15
Type: CAZyme
Location: 26018 - 28129 (-)
Type: CAZyme
Location: 26018 - 28129 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.