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Genome Details

Selected Rep_genome_ID: CGMR023366
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes timonensis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR023366 3,253,717 99.52% 0% China Asia CGMR
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
CGMR023366_CGC18 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
CGMR023366_CGC37 CGCFAM_00001 Yes 7 4 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
CGMR023366_CGC30 CGCFAM_00030 Yes 4 2
CGMR023366_CGC40 CGCFAM_00128 Yes 11 5
CGMR023366_CGC42 CGCFAM_00152 Yes 17 4
CGMR023366_CGC12 CGCFAM_00219 Yes 4 2 host glycan
CGMR023366_CGC35 CGCFAM_00439 Yes 10 5 host glycan
CGMR023366_CGC16 CGCFAM_00475 Yes 17 3
CGMR023366_CGC38 CGCFAM_00511 Yes 5 1
CGMR023366_CGC20 CGCFAM_00543 Yes 4 1
CGMR023366_CGC9 CGCFAM_00617 Yes 7 1
CGMR023366_CGC32 CGCFAM_00632 Yes 7 1
CGMR023366_CGC19 CGCFAM_00697 Yes 4 1
CGMR023366_CGC23 CGCFAM_00722 Yes 17 5 beta-mannan
CGMR023366_CGC6 CGCFAM_00921 Yes 9 1
CGMR023366_CGC1 CGCFAM_00984 Yes 4 1
CGMR023366_CGC24 CGCFAM_01181 Yes 3 1
CGMR023366_CGC13 CGCFAM_01681 Yes 7 1
CGMR023366_CGC4 CGCFAM_01682 Yes 8 1
CGMR023366_CGC22 CGCFAM_01768 Yes 3 1
CGMR023366_CGC41 CGCFAM_02057 Yes 4 1
CGMR023366_CGC26 CGCFAM_02181 Yes 4 1
CGMR023366_CGC25 CGCFAM_02300 Yes 7 3
CGMR023366_CGC39 CGCFAM_03339 Yes 3 1
CGMR023366_CGC3 CGCFAM_03728 Yes 8 2
Top CAZyme Families