Cluster: CGMR023366_CGC23
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate: beta-mannan
- Genome ID: CGMR023366
- CGC Family ID: CGCFAM_00722
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_19369 | k141_19369_146 | 155276 | 155860 | + | 1.B.14.6.2 |
| TC | k141_19369 | k141_19369_147 | 155888 | 158380 | + | 1.B.14.6.13 |
| TC | k141_19369 | k141_19369_148 | 158385 | 160634 | + | 8.A.46.2.2 |
| pfam | k141_19369 | k141_19369_149 | 160675 | 161610 | - | DUF4886 |
| CAZyme | k141_19369 | k141_19369_150 | 161626 | 164163 | - | GH2 |
| TF | k141_19369 | k141_19369_151 | 164210 | 165073 | - | HTH_AraC | HTH_AraC |
| TC | k141_19369 | k141_19369_152 | 165230 | 166810 | + | 2.A.21.3.19 |
| CAZyme | k141_19369 | k141_19369_153 | 166812 | 167840 | + | GH130_5 |
| TC | k141_19369 | k141_19369_154 | 167995 | 171090 | + | 1.B.14.6.1 |
| pfam | k141_19369 | k141_19369_155 | 171103 | 172620 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | k141_19369 | k141_19369_156 | 172643 | 174250 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_19369 | k141_19369_157 | 174306 | 175787 | + | GH173 |
| CAZyme | k141_19369 | k141_19369_158 | 175790 | 177265 | + | GH173 |
| CAZyme | k141_19369 | k141_19369_159 | 177301 | 178455 | + | GH26 |
| NULL(UNKNOWN) | k141_19369 | k141_19369_160 | 178538 | 179305 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_19369 | k141_19369_161 | 179361 | 181181 | - | SusD_RagB | SusD-like_3 |
| TC | k141_19369 | k141_19369_162 | 181194 | 184193 | - | 1.B.14.6.1 |
Gene ID: k141_19369_146
Type: TC
Location: 155276 - 155860 (+)
Type: TC
Location: 155276 - 155860 (+)
Gene ID: k141_19369_147
Type: TC
Location: 155888 - 158380 (+)
Type: TC
Location: 155888 - 158380 (+)
Gene ID: k141_19369_148
Type: TC
Location: 158385 - 160634 (+)
Type: TC
Location: 158385 - 160634 (+)
Gene ID: k141_19369_149
Type: pfam
Location: 160675 - 161610 (-)
Type: pfam
Location: 160675 - 161610 (-)
Gene ID: k141_19369_150
Type: CAZyme
Location: 161626 - 164163 (-)
Type: CAZyme
Location: 161626 - 164163 (-)
Gene ID: k141_19369_151
Type: TF
Location: 164210 - 165073 (-)
Type: TF
Location: 164210 - 165073 (-)
Gene ID: k141_19369_152
Type: TC
Location: 165230 - 166810 (+)
Type: TC
Location: 165230 - 166810 (+)
Gene ID: k141_19369_153
Type: CAZyme
Location: 166812 - 167840 (+)
Type: CAZyme
Location: 166812 - 167840 (+)
Gene ID: k141_19369_154
Type: TC
Location: 167995 - 171090 (+)
Type: TC
Location: 167995 - 171090 (+)
Gene ID: k141_19369_155
Type: pfam
Location: 171103 - 172620 (+)
Type: pfam
Location: 171103 - 172620 (+)
Gene ID: k141_19369_156
Type:
Location: 172643 - 174250 (+)
Type:
Location: 172643 - 174250 (+)
Gene ID: k141_19369_157
Type: CAZyme
Location: 174306 - 175787 (+)
Type: CAZyme
Location: 174306 - 175787 (+)
Gene ID: k141_19369_158
Type: CAZyme
Location: 175790 - 177265 (+)
Type: CAZyme
Location: 175790 - 177265 (+)
Gene ID: k141_19369_159
Type: CAZyme
Location: 177301 - 178455 (+)
Type: CAZyme
Location: 177301 - 178455 (+)
Gene ID: k141_19369_160
Type:
Location: 178538 - 179305 (-)
Type:
Location: 178538 - 179305 (-)
Gene ID: k141_19369_161
Type: pfam
Location: 179361 - 181181 (-)
Type: pfam
Location: 179361 - 181181 (-)
Gene ID: k141_19369_162
Type: TC
Location: 181194 - 184193 (-)
Type: TC
Location: 181194 - 184193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.