Cluster: CGMR023366_CGC16
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR023366
- CGC Family ID: CGCFAM_00475
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_141995 | k141_141995_62 | 71262 | 72248 | - | GT9 |
| pfam | k141_141995 | k141_141995_63 | 72289 | 72894 | - | DUF4254 |
| CAZyme | k141_141995 | k141_141995_64 | 72970 | 73974 | + | GH73 |
| NULL(UNKNOWN) | k141_141995 | k141_141995_65 | 73993 | 74679 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_141995 | k141_141995_66 | 74835 | 76967 | + | 8.A.51.1.1 |
| pfam | k141_141995 | k141_141995_67 | 76976 | 77434 | + | DNA_binding_1 | Methyltransf_1N |
| CAZyme | k141_141995 | k141_141995_68 | 77435 | 78982 | - | GT22 |
| TC | k141_141995 | k141_141995_69 | 79129 | 80556 | - | 3.D.1.2.1 |
| TC | k141_141995 | k141_141995_70 | 80563 | 82047 | - | 3.D.1.2.1 |
| TC | k141_141995 | k141_141995_71 | 82061 | 83953 | - | 3.D.9.1.1 |
| TC | k141_141995 | k141_141995_72 | 83967 | 84275 | - | 3.D.1.2.1 |
| TC | k141_141995 | k141_141995_73 | 84288 | 84797 | - | 3.D.9.1.1 |
| STP | k141_141995 | k141_141995_74 | 84801 | 85241 | - | Fer4 | Fer4 |
| TC | k141_141995 | k141_141995_75 | 85244 | 86281 | - | 3.D.1.5.1 |
| TC | k141_141995 | k141_141995_76 | 86333 | 87952 | - | 3.D.1.5.1 |
| TC | k141_141995 | k141_141995_77 | 87945 | 88571 | - | 3.D.1.3.1 |
| TC | k141_141995 | k141_141995_78 | 88592 | 88942 | - | 3.D.1.8.1 |
Gene ID: k141_141995_62
Type: CAZyme
Location: 71262 - 72248 (-)
Type: CAZyme
Location: 71262 - 72248 (-)
Gene ID: k141_141995_63
Type: pfam
Location: 72289 - 72894 (-)
Type: pfam
Location: 72289 - 72894 (-)
Gene ID: k141_141995_64
Type: CAZyme
Location: 72970 - 73974 (+)
Type: CAZyme
Location: 72970 - 73974 (+)
Gene ID: k141_141995_65
Type:
Location: 73993 - 74679 (+)
Type:
Location: 73993 - 74679 (+)
Gene ID: k141_141995_66
Type: TC
Location: 74835 - 76967 (+)
Type: TC
Location: 74835 - 76967 (+)
Gene ID: k141_141995_67
Type: pfam
Location: 76976 - 77434 (+)
Type: pfam
Location: 76976 - 77434 (+)
Gene ID: k141_141995_68
Type: CAZyme
Location: 77435 - 78982 (-)
Type: CAZyme
Location: 77435 - 78982 (-)
Gene ID: k141_141995_69
Type: TC
Location: 79129 - 80556 (-)
Type: TC
Location: 79129 - 80556 (-)
Gene ID: k141_141995_70
Type: TC
Location: 80563 - 82047 (-)
Type: TC
Location: 80563 - 82047 (-)
Gene ID: k141_141995_71
Type: TC
Location: 82061 - 83953 (-)
Type: TC
Location: 82061 - 83953 (-)
Gene ID: k141_141995_72
Type: TC
Location: 83967 - 84275 (-)
Type: TC
Location: 83967 - 84275 (-)
Gene ID: k141_141995_73
Type: TC
Location: 84288 - 84797 (-)
Type: TC
Location: 84288 - 84797 (-)
Gene ID: k141_141995_74
Type: STP
Location: 84801 - 85241 (-)
Type: STP
Location: 84801 - 85241 (-)
Gene ID: k141_141995_75
Type: TC
Location: 85244 - 86281 (-)
Type: TC
Location: 85244 - 86281 (-)
Gene ID: k141_141995_76
Type: TC
Location: 86333 - 87952 (-)
Type: TC
Location: 86333 - 87952 (-)
Gene ID: k141_141995_77
Type: TC
Location: 87945 - 88571 (-)
Type: TC
Location: 87945 - 88571 (-)
Gene ID: k141_141995_78
Type: TC
Location: 88592 - 88942 (-)
Type: TC
Location: 88592 - 88942 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.